Coregonus clupeaformis (lake whitefish): 121539159
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Entry
121539159 CDS
T08357
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121539159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121539159
03021 Transcription machinery [BR:
cclu03021
]
121539159
03036 Chromosome and associated proteins [BR:
cclu03036
]
121539159
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
ARID
121539159
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121539159
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121539159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
121539159
NCBI-ProteinID:
XP_041703390
LinkDB
All DBs
Position
25:17129943..17410387
Genome browser
AA seq
2317 aa
AA seq
DB search
MATQVASTPTRTNNKNKKLSGNLGQELNSGKSGRGNISRSGEMLGAGDGTNTMNNVDHHH
RNELNMVNSTYSPINNSDTPEKESGNNITSSDSTTSPGGMETGLIANHKLKNVGSGDPPQ
HLTPPQQQSQFNPFPQHQQRQIQSNNINNNNSQATRGESKNHHHRGKEGVLGSQPEQQML
SKGEGDHTCKPGERMGARNEHSNLGPTTNNIINQPQSSGGNSEFNNYYGTSRVGPSYDQY
GGQQSTGMGVMHSSGPNNMDPVHNSQEGYHNSHYNHYSSYPQGYGGAGYGMMAPSRQGSN
MMIGPGSNTPAGHVKAAMGAAACGSGGSVGGFQRFPGQSQHPTGATPTLNQLLTSPSPMM
RGYGSGYQDYNSPSAQQQDGIGRGKDMTSQYGSTTHGWPGQQRNHPSMSPGNGGQGISRP
QVASMDFMAMKRSQLYGMGNNPYSQQQQGGPYPSQPYGSPTPHRYPMGMQGRGQVGIGGM
QYPQQQQVPPQYGQQGIGGYSQQQQQGTPPGPYFSPPHQNPTAPPSQPPYLPPHAPPQQE
APQESYRGSTRSQQQAPGNSGKANHEDMGLIPQDRPSSLPDLSGSIDDLPTGTEAGHSSD
ISATGSTSSQGEQSNPAQSPFSPHASPHLSGQGSGPSSSPVGSPVGSNQSRSGSGPISPV
SGPTTAPGSQMAPQTPGNMLDVPHPPLTQSPMPQERGFISNMQRNQSGSQFAPPPQSGPS
MSPHPSPGPGGQMYPGMGPAPYPHGGPYRPQGSQANQYGPQGNYPRPPNYGGTPSANYSS
PGPGPGMTSSQGLNASSPMHGQGPGQPMGRSPGAGSRPYHNMAPSSPSMPQPAGPGMGPP
SLGNVNRKAQEAAAAVMQAAANSVQGRQGSYPGPGMNLMGTAGSGAPYNQSPGNNSGMGN
PQGPPYNMPPSGAMGMAVSGMMTPDGKQKTDGKEENMPTNELPKHKDGYSVSHCISQPTT
PGAMPVPSPLSPSPASLSSYHGDDSDSISSPVWPKTPSSPKLNSSTMTNELITRLYDMGE
EPERRGWVDRYLSFMEERGTPVPHLPAVGKKPLDLCRLYMAVREIGGLAMVNKNKKWREL
STSLSVGTSSSSASCLKKQYIQYLFAYECKVERGEDQPADSNTGTGGDNRKQAKVQPPSP
ANSGSLQGPQTPQSSGSSSMAEMSGDLKPLTPATTPQGQGQVTPIPASRSSVVSVQDPFS
EVSDPAFQKRNSLPLGGSGGAYQQGVNMPPDMMMRMQYEKDPFAGMRKVAGGEPYMPGQM
PSGGMQEMYGRPPSAMGQRSQYPYGPCYDRRPDHVMGMEGTMGPPGNQSNMGPSNSEGSI
YSPNRYPSQQRHEGYGQQYPGMPYGIHPSGMYPQQQGYKRPMEGMYGSPGKRHEGEMYGP
PAKRHEGEMYAMQYRGQQPDMYNQYTTGYSGPERRPMQGQFPYHSPYSRERMQASSQGQH
PQHSMGPQMMSGGPPANNGVEGPQGPNMWPSRTDMGYPYPNRQGAPSQVQPYGPMGRGDD
LEGRPIQDGQWLGHGGHRQSSYMTGGMTPMSSRQPPSAYQTSPSMANHLPRAPSPGSFQR
SMEARMSPNKAVFMGSMKMPGKPGMPMPGQGNGHPSQVTPNLLRDLNYPLGSVEATMPLF
KPRRKITSKDTGTPEAWRVMMSLKSGLLGESTWALDTINILLYDDSTVASFTLTQLPGFL
ELIVEYFRRCVMEIFGILEEYEIGTIGQKSLLGAEACDQGEELTEPEIDCEDSQPEPEHE
QEMERGEVERGEVEKGEEKPADITKKMTVEVMSPPSATEPAPEGMKEESEAEVKKEEGEK
EEDGEKEEGKEKEKEEEEEESEKPTESKEASAESKEDSPYQPPSEPEPRPQQASKYDKFP
IKILHKEDLIEDMTEQLGHVTEFTSGLLHWQAGGGDSTVHIQTHFERRGEHPDMTEGERE
KCASLNKDQDTEEGGKQTEKGITATIDDILCARLGALSEGHPTHSAPTYPFRLHQGGGHQ
HITLLEDEPRCLDEAPLSTASHWQDSLAKRCLCVSNIIRSLSFIPGNDSDMSRHPGLVLI
LGRLLLLHHQHPERKRTPPSYQREEVQERGLACSKDEWWWNCLTTLRENTLVTLANISGQ
LDLSLYPETICLPILDGLLHWMVCPSAEAQDPFPSATPHSPLTPQRLVLECLCKLSIQDN
NVDLLLATPPFSRQEKLYAILVRYVGQRKNQVYREMAVATLSNLAQGDSTAARAIAVQKS
SVGNLMGFLEDGVSIAQYQQNPHSLLHMVHHPPMEPPSVNMMCRAANALLAMAKVEENRP
EFVLYEGRLLDISISSVLNQGVASIISEVLFQFVKKL
NT seq
6954 nt
NT seq
+upstream
nt +downstream
nt
atggctacgcaagtggcatcaacaccgacaagaactaataataagaataaaaaattgtct
ggcaatttgggtcaagagctaaattcggggaaatcgggaagaggaaatatatcgagatct
ggagaaatgcttggagctggtgatgggactaacacaatgaataatgttgaccaccaccac
cgaaatgagctcaacatggtcaattcaacttattctccgattaacaattctgacacaccg
gagaaggagagtggaaataacatcacttcatcagattcgacgacctctccgggggggatg
gaaaccgggttgatagcgaaccataaactgaaaaatgttgggagcggagatccccctcag
cacctcacaccgccgcaacagcagtcacaatttaacccgtttcctcagcatcagcagcgc
cagatacaaagtaacaacatcaacaacaacaacagccaagcgacaaggggagagagtaag
aatcaccaccaccgagggaaggagggtgttttgggtagccagccagagcagcagatgcta
agtaaaggtgagggggatcatacctgtaaaccaggggagcggatgggcgcaaggaatgaa
cattccaacttgggaccaacgaccaacaacatcatcaaccagccccagagctcgggagga
aacagcgagtttaataactactatggcacttccagagtagggccctcctatgatcaatat
ggcggacaacaaagcactgggatgggggtgatgcactcctctggacccaacaacatggac
ccagtgcacaactcccaagaagggtaccacaacagccactacaaccactactctagctac
ccgcagggctacggtggcgcgggctatggcatgatggccccgtccagacagggcagtaac
atgatgattggccctggcagcaacactccagctggccatgtcaaggctgctatgggagct
gctgcctgcggttctggtggaagtgttgggggctttcagagattcccaggacagagtcag
catcctaccggggccaccccgactctaaaccaactgcttacgtctccaagtccaatgatg
cgaggttatggcagtggctatcaagactataacagtccctctgcacaacaacaagatggc
ataggccggggcaaagacatgacttctcagtatggctccacaacccatggctggccaggg
caacagagaaatcacccgtccatgagtcctggaaacggagggcaaggtatcagcagacca
caggtggcctctatggacttcatggctatgaagcgctcccagctctacgggatgggcaac
aacccctactctcagcagcagcagggcgggccctaccccagccagccatacggatcaccc
actccacaccgatacccaatggggatgcaggggaggggccaggtgggtattggcgggatg
cagtaccctcaacagcagcaggttcccccccagtacggccagcagggtataggaggatac
agccagcagcagcagcagggaacgcccccgggaccctacttcagccccccccatcagaac
cccaccgcccccccttcacagcccccctacctgccaccccacgccccacctcagcaggag
gctcctcaggagagctacagaggcagcaccaggagtcagcagcaggccccagggaattct
gggaaggccaaccatgaggacatgggtctgatcccgcaggaccgcccctccagcctcccg
gacctgtctggctccatagatgacctccctacaggtacagaggctggtcacagttcagac
atcagtgctacaggctccaccagtagccagggggagcagagtaacccagcccagtcaccc
ttctcaccccacgcgtcaccccacctgtctggtcagggcagcggcccatcatcctctcct
gttgggtcccctgtgggctccaaccaatcacgttccggctctggccccatctccccagtc
agcggcccaaccacagcaccaggttcccagatggctccccagactcctggcaacatgttg
gatgtcccccacccccccttaacccagtcccccatgcctcaggagaggggctttatttcc
aacatgcagagaaaccagtctggctcccagtttgcaccaccacctcagtcagggccctcc
atgtcccctcacccctctcctggtcctgggggacagatgtacccagggatggggcccgcg
ccctacccacatggtggcccctacagacctcagggatcccaggcaaaccagtatggaccc
caaggaaactacccacgtccacccaactacggcgggacccccagtgccaactacagcagc
cccgggcccggccctggcatgaccagcagccagggtttgaatgccagcagccccatgcac
ggccagggtcccgggcagcccatgggccgcagtcctggtgcgggcagccgcccctaccac
aacatggcccccagttcccccagtatgccccagccagccggccctgggatgggccctcct
tcactgggcaatgtcaaccgcaaggcccaggaggcagccgccgccgtcatgcaggccgca
gctaactctgtacagggcagacagggcagctacccaggccctggcatgaacctgatggga
acagcaggctctggagccccctacaaccagtcaccaggcaacaactcaggcatgggcaat
ccacagggtccgccctacaacatgccaccctcaggggccatggggatggctgtgagtggg
atgatgactcctgatgggaagcagaaaacagatggcaaagaggagaacatgcccaccaat
gaacttccaaaacacaaggatgggtacagtgtatcccactgtatctcccagcccaccacc
cctggtgccatgcctgtcccctctcccctgtcccccagcccagccagcctgtcctcctac
catggcgatgacagtgacagcatcagtagccccgtctggccaaagactccctccagccct
aagctgaactcgtccaccatgacaaacgagctaatcactcgtctgtatgatatgggtgag
gagccggagaggcgtggctgggtggaccggtacctgtccttcatggaggagaggggtaca
cctgtcccccaccttcccgcagtgggcaagaaacccctggacctctgcagactctacatg
gctgtcagggagatagggggcctggccatggtgaacaagaacaagaagtggcgtgagctg
tccaccagcctgagtgttggtacctccagtagctcagccagctgtctgaagaagcagtac
atccagtacctgtttgcctatgagtgtaaggtggagcgaggagaggaccagccggccgac
agcaacactgggactgggggggacaacaggaagcaggccaaggtgcagccgccctctcct
gctaactcagggtctcttcagggtccccagaccccccagtcatcaggcagcagctccatg
gcagagatgtcaggtgacctgaagcccctcaccccagccaccaccccccagggacaggga
caggtcacccccatcccagccagcaggagcagtgtggtgagtgtgcaggacccgttctca
gaggtgagcgacccggccttccagaagcgtaactctctccccctggggggctctgggggt
gcgtaccagcagggggtcaacatgccccctgacatgatgatgaggatgcagtacgagaag
gaccccttcgctggcatgagaaaggtggcaggaggtgagccctacatgccaggccagatg
cccagtggtggcatgcaggagatgtacggcaggcctccatcagccatgggccagcgctcc
cagtacccatatggaccatgctacgacaggagaccagaccatgtgatggggatggaaggg
accatgggcccccccgggaaccagagcaacatgggaccgtccaacagcgagggcagcata
tactctcccaacagatacccctcccagcagagacacgaaggctatgggcaacagtaccct
ggcatgccatatggaatacacccctcagggatgtaccctcaacaacagggctacaagcgc
cccatggagggcatgtacgggtccccaggcaagagacatgagggggagatgtacggcccc
ccagcaaagagacacgagggggagatgtatgccatgcagtataggggccagcagcctgac
atgtacaaccagtacaccactggttactctgggcctgagagaaggcccatgcagggccag
ttcccctaccattccccctacagccgggagcgcatgcaggcctctagccagggtcagcac
ccccagcactccatgggcccccagatgatgtccggggggccacccgccaacaacggagtg
gaaggaccccaggggcccaacatgtggccctccaggacagacatgggttatccctacccc
aacagacagggggcaccctcccaggtacagccatatggtcctatggggagaggagatgat
ttggagggccgacccatccaggatggtcagtggctcggacacggaggccatcgccagtcc
tcctacatgacaggtggtatgaccccaatgtcctcccgccagcccccctctgcctaccag
acctccccctccatggccaaccacctaccccgagcccccagtcccggctccttccagcgc
tccatggaggcacgcatgtcccccaacaaagctgtctttatgggctccatgaagatgccg
ggcaaaccgggcatgcccatgccagggcagggtaatgggcacccaagccaggtcacacct
aacctgctgagagatctcaactaccctctaggatctgtagaggccaccatgccccttttc
aagccacgtcgcaaaattacctcaaaggacactggaaccccagaggcgtggcgagtgatg
atgtctctgaagtcaggtctgctgggtgagagtacctgggccctggacaccatcaacatc
ctgctgtatgacgacagcactgtggcctccttcaccctcacacagttgcctggcttcctg
gagctgatagtggagtacttcagacgctgtgtgatggagatctttggcatcctggaggag
tatgagatagggaccatcggccaaaagagcctccttggggctgaagcctgtgaccagggg
gaggagctgactgaacctgagatcgactgtgaggacagccaaccagagcctgagcatgaa
caggagatggagaggggggaggtggagaggggggaggtggagaagggggaggagaaacct
gctgacatcacaaagaaaatgacagtggaggtgatgtcaccccccagtgcaacggaacca
gcccctgagggaatgaaggaggaatctgaagccgaggtgaagaaggaagagggggagaaa
gaagaggatggagagaaagaagaggggaaagagaaagagaaagaggaagaggaagaggag
agtgaaaagccaaccgagagtaaggaagcctcagctgagagtaaggaagactctccttat
cagcctccttcagagcccgagccaaggccacaacaggccagcaagtacgacaaattcccc
atcaagatcctgcacaaagaggacctgattgaggacatgaccgagcagctgggtcacgtg
acagagttcactagcggactgctccactggcaggcaggcgggggggattccactgtccac
atccagacccactttgagcgcaggggagagcaccctgacatgacggagggagagagagag
aaatgtgccagtctcaataaagatcaggacacagaggaggggggaaagcagacggagaag
ggtatcactgccaccatcgatgatatactgtgtgcccggttaggggctttgtcagagggc
caccccacccactctgcccccacctaccccttcaggctgcaccagggagggggccaccag
cacatcaccctgctagaggacgagccccgctgtctggacgaggctcccctctccacggcc
tcccactggcaggactccctggccaaacgctgcctctgtgtgtccaacatcatccgcagc
ctctccttcatccctgggaatgactcagacatgtcccgtcacccaggcctggtgctgatc
ctgggcagactgctgctgctccaccaccagcacccagagaggaagaggacgccccctagc
taccagagagaggaggtgcaggagcggggcctggcctgcagtaaggacgagtggtggtgg
aactgtctcactacactcagggagaacaccttggtcactctggctaacatctctggccag
ctggacctgtccctctaccctgagaccatctgcctgcccatcctggacggcctgctccac
tggatggtgtgcccttctgccgaggcccaggaccccttcccctcagccaccccccactcg
cccctcaccccccagagactggtgctggagtgcctgtgcaagctgagcattcaggacaac
aacgtggacctgctgctggccacgccgcccttcagccgccaggagaagctctacgccatc
ctggtgcgttacgtgggacagcgtaagaaccaggtgtaccgcgagatggccgtggccacc
ctatccaacctggcacagggggactctacggcagcacgcgccatcgccgtacagaagagc
agcgtgggtaacctgatgggcttcctggaggatggggtgagcatagcccagtaccagcag
aacccccacagcctgctgcacatggtccaccatccacccatggagcctcccagcgttaac
atgatgtgtcgggctgccaatgctctgctggctatggccaaggtggaggagaacaggcca
gagtttgtcctgtacgagggccgactcctggacatctccatctcctctgtgctcaaccag
ggggtggccagcatcatatctgaagtactctttcagtttgtaaaaaaattatga
DBGET
integrated database retrieval system
