KEGG   Coregonus clupeaformis (lake whitefish): 121539182
Entry
121539182         CDS       T08357                                 
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082  ATP-dependent chromatin remodeling
cclu03083  Polycomb repressive complex
cclu04110  Cell cycle
cclu04330  Notch signaling pathway
cclu04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    121539182
   03083 Polycomb repressive complex
    121539182
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    121539182
   04350 TGF-beta signaling pathway
    121539182
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    121539182
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cclu03036]
    121539182
Enzymes [BR:cclu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     121539182
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     121539182
   HDAC complexes
    Sin3A-HDAC complex
     121539182
    BRAF-HDAC complex
     121539182
    REST complex
     121539182
    SHIP complex
     121539182
    MiDAC complex
     121539182
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     121539182
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    121539182
  Chromatin remodeling factors
   NuRD complex
    121539182
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 121539182
NCBI-ProteinID: XP_041703424
LinkDB
Position
25:12654941..12662534
AA seq 531 aa
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMTKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPMLMLG
GGGYTIRNVARCWTYETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEEEDPNKRISIRAHDKRIACDE
EFSDSEDEAEGQGGGRRNAASFKKAKRTKTEEDKEGEEKKGEEKKAGDEKNADEKKEVKE
EKVPEEEKVDTTKGYFPSVHPTGQKSSPRHREELLDIYLKQSHLGPVSQKH
NT seq 1596 nt   +upstreamnt  +downstreamnt
atggcgctgagttctcaaggaacaaagaaaaaagtttgctactattatgatggtgatgtt
gggaattactactatggccaggggcaccccatgaagccacaccgtatccgcatgacacac
aacctcttgctgaactatggtctctacagaaagatggagatataccgacctcacaaagcc
aatggagaggagatgaccaagtaccacagtgacgactacatcaagttcctgcgttccatc
aggcctgacaacatgtcagagtacagcaaacagatgcagagatttaatgttggtgaggat
tgccctgtgtttgatggcctgtttgagttctgccagctctcaacaggaggctctgttgct
ggagctgtgaagctgaacaaacagcagaccgacattgccattaactgggctggaggtctt
catcacgccaagaagtctgaggcgtcaggtttctgctatgtgaatgacattgtgctcgcc
attttggagttattgaaataccaccagagagttctgtacatagacattgatatccaccat
ggagatggagtggaggaggcattctacaccacagacagggtcatgacagtgtccttccac
aagtacggagagtacttccccggcactggagacctgagggatattggcgcagggaagggc
aagtactatgctgtgaattaccctctgagagatgggatagacgacgagtcttacgaagcc
atattcaaacctatcatgactaaagtgatggagatgtaccagcctagtgcagtggttctt
cagtgtggtgctgactctctctcaggagacaggcttggctgctttaacctcaccatcaaa
ggccatgctaagtgtgtggagtacatgaagagcttcaaccttcccatgctgatgctgggt
ggtggaggctataccatccggaacgtggcccgctgctggacctatgagacagctgtggct
ctggacagctccataccaaacgagcttccatacaatgattactttgagtactttgggcca
gacttcaaactgcacatcagcccctccaacatgaccaaccagaacaccaacgactacctg
gagaagatcaagcagcgtttgtttgagaaccttcgaatgctgccccacgccccgggggtc
cagatgcaggccatcccagaagacgccgtgcaggaggacagtggagacgaggaggaggag
gaagaccctaacaaacgcatctccattcgcgcccatgacaagaggatagcgtgtgacgag
gagttctcagactctgaggacgaggctgagggtcaagggggcggacggagaaatgcagcc
agcttcaagaaagccaagagaacaaagactgaagaagacaaagagggagaagagaagaaa
ggggaggagaagaaagcaggtgatgaaaagaatgctgatgagaagaaagaagtcaaagaa
gaaaaggtgccagaggaggagaaagtggacacaacaaaggggtattttccctctgttcat
ccaacaggccaaaagagcagtccaagacaccgtgaggagctcctagacatatatttaaag
caatcacacctgggcccggtttcccaaaagcattaa

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