Coregonus clupeaformis (lake whitefish): 121539187
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Entry
121539187 CDS
T08357
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121539187 (srrm1)
03015 mRNA surveillance pathway
121539187 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121539187 (srrm1)
03041 Spliceosome [BR:
cclu03041
]
121539187 (srrm1)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121539187 (srrm1)
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
121539187 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
121539187
NCBI-ProteinID:
XP_041703434
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All DBs
Position
25:complement(12567379..12584417)
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AA seq
879 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDEKKEKENKENRERESPRRRKSRSQSPRRRSPV
KRERKRSHSRSPRRKPSPSSSPPPPAPAVTLVSVTLPQSTEEPQPEPDTSESAVPEPVVQ
EASSTSDLKPGTVVVVPDSVMKVKEPSPDKASKKEERPKPREKDSRRDRPRHHSRSHSRS
RRRPKSRSRSYSPRRRPSPRRRMSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSQSSSGS
NSSTSRSSQKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPSGKARRSASPRARKG
RSSASPPRSAGSKKKPASRNDSQSPVPKPRHSEASESEGATADPVQQRRQYRRQNRETSS
DTGSSSSSEDDGSKRPAGGPAARNGDVRRRRSRSPSSPRRRHRDSSPRKRRSPSPGGRRS
PPRRRRSPSPPRRRSPSPPPRRRSPSPRRFSPPIQRRYSPTPLGPQKRRLSGSPPPKRLS
PMPKRRPSRSPKRRSPPPQKRRTPPLPTSPLRHRRSPMLPSNRPGRDTRSPPAAHSKRLS
PSPANRGRAMRGSASPQGCFDTSGTSPPGQRRQASPSHGNRAIRRVSRTPEPRKNQRASQ
SPQPMRRVSSRSPSGSPKPGALKQPAPASGFPSPGRSASGSPSATLAKKASNGSGSPSPN
KNSDTEAGGKKNKKKKKEKKHKKEKKHKKHKKHKKEKSGVPAAAGDGQENLGMEGDADSD
PKKESDSEVEERLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctggaggtcatcaaaccttggatcactcagcgagtgacggagatcctg
gggttcgaggatgatgtcgtcatagaattcatatttaaccagctggaagaaaagcacccg
gacagtaagatgatgcagatcaacttgaccggcttcctgaatgggaagaatgccagagag
tttatgagggacctgtggcctctgctgctcagtgctcaggacaacatcgccggtatcccc
tccgccttcctagagcagaagaaagaggagatcaaacagagacagattgagcaggagaag
ctcgcctctctgaagaagattgatgagaagaaggaaaaggaaaacaaagagaacagagaa
agggagagccccagaaggaggaagtcaaggtcacagtctccacggcgacggtctccagtg
aagagggagagaaagcgcagtcactcccgctccccgaggcgtaagcccagtcccagcagc
tcccctccaccaccagccccagccgtcaccctggtcagtgttaccctaccccagagcact
gaggagccccagcctgagccagacacctctgagagcgccgtacctgagccagtcgttcaa
gaggcctcctccaccagtgacttgaagccgggcactgtggttgtggtacctgactcggtg
atgaaggttaaagaaccctccccagataaggcttctaaaaaggaggagaggcccaagccc
agggagaaggacagcaggagggacaggccccgccaccactctcgctcccattcccgctcc
cgtagacgacccaaatcacgctccagatcttactccccacgccggaggccgagccccagg
agacggatgtcccctcgtcgtaggagcccccccagacgtggccccccaggccccagacac
aggcgcagtcgctcccctgtccgcaggcggcgctctcgctcccaatcatcctctgggagc
aactcctccacgtctcgctcgtctcagaaggccatgaagagaacgtcaaccacacctccc
aggaaacagccccgcggccacgcagctgatccctccctcagcccctccaggagaagagcc
cccaatggcagcccctctgggaaggcccgacgctctgcctcccctcgggccagaaagggc
cggtcctcagcctccccacccagatcagctggttcaaagaagaaaccagcatcaaggaat
gattcacagtctcctgttccaaaacccaggcattctgaagcatcggagtcagagggggct
accgcagatcctgtgcagcagcgacgtcagtatcgcaggcagaatcgggagacatcttca
gatactggatcatcatcctcatcagaggacgatgggtccaagaggccggccgggggacca
gcagcgaggaacggggatgtcaggaggcggcgcagtcgctccccctcctcccccaggaga
cgacacagggacagctcccccagaaaaagacgttccccctcccctggaggacgcagatct
cccccacgacgtcgcagatctccctctcctcctagacgcaggtctccctctccacctcct
cgcagacgctccccctcacccagacggttctctccccccatccagcggcgctacagcccc
actcccctgggccctcagaagagaaggctatcggggtctccccctcccaaacgcctatcc
ccgatgcccaagcgccgtccctccaggtccccgaagcgcaggagtccccctccccaaaag
agacgcacgcctcccctccccacctctcccctccgacacaggaggagccccatgctccca
tccaaccggccgggccgggacactcgatccccccctgctgctcacagtaagcgcctctcc
ccctcccctgccaaccgtgggcgagccatgcgggggtccgctagtcctcaggggtgcttt
gatacctccggcacctctccacctggccagaggcgccaggcgtccccctcacacggcaac
agggcaatccgcagggtgtcccggacaccagagccccgcaagaaccagagagcctctcag
agcccccagcctatgaggagagtgtcgtcaaggtcaccgtctggttcccctaaaccagga
gccctgaagcagccggccccagcctcgggcttcccctcaccaggccgctcggccagtggg
tcgccatcagccaccctggccaaaaaggccagcaatggctctggcagcccttctccaaac
aagaattcagacactgaggctggaggaaagaaaaacaagaagaagaagaaggagaagaaa
cacaagaaggagaagaaacacaagaagcacaagaaacacaagaaggagaagagtggtgtg
ccggcggctgctggggatggccaggagaacctggggatggagggggatgcggattccgac
cccaaaaaggaatcagacagtgaagtagaagagcgtctcgacgacctagagaagcacctg
agagagaaggcactgcgttccatgaggaaagctggaaagctgtccccgccactgtcctga
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