Coregonus clupeaformis (lake whitefish): 121539291
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Entry
121539291 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: autophagy-related protein 2 homolog B
KO
K17906
autophagy-related protein 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04136
Autophagy - other
cclu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121539291
04136 Autophagy - other
121539291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121539291
03029 Mitochondrial biogenesis [BR:
cclu03029
]
121539291
Membrane trafficking [BR:
cclu04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
121539291
Mitochondrial biogenesis [BR:
cclu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
121539291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG2_CAD
VPS13_N
Motif
Other DBs
NCBI-GeneID:
121539291
NCBI-ProteinID:
XP_045063422
LinkDB
All DBs
Position
25:complement(7789939..7821834)
Genome browser
AA seq
2100 aa
AA seq
DB search
MPWPFSESIKKRACRYLLHRYLGNFLQEKLSLDQLSLDLYQGTGSLAQVPLDKWSLNEIL
ESADAPFEVIEGFIQTISLTVPWASLLQENCALEVKGLEMVFRPRPHMASGMEPMYWSSF
MTSSMQLAKECLSQRLTDDLGESFQPLEGLEKFAETIETVLRRVKVTFLDTVLRIEHFPE
NSKTGIALEMRINKIVYCDETGEESSSVNVHQPTTFAHKNVQLEGVTVFWDEFSEAARAG
FKSSPTQQXVYIQIILCVVLKRRELILTHPFSAPPQETEAKLSPSWNPRIICEPHPQFTE
PVSSATPFEPMQIGHLSGRIELSLVLKQNQTMPGAKLDVDGQISTMIVLLSPRQVHLLLD
VFGVFSGSAGPEWGKDKRNRPMQQEDEYRLHMELNRCLKKESDPDLFESQTTRTVSSRED
VFFSMADMDMSHSLSSLPPLGEPPTVDLDLSLNSNYSPSPGESPGNATILWDYYLDVPRQ
REKQAQESPFLTRDSPLQHKLLRQTSHPTKAHSDESRPELVFRLTLGSLAVCVLHIDPLP
PPDAAPSPLAPMAADFFRVVCSDQLPAAAFIQLRTAFDEACPYDHLRFVAQGMKVTYEHC
QSSSLRTFSTDVSLGQMELLECLFPSEAPSGGSQRGVQYTELLTFDTSVTTEAPSATCLH
LLYKLAERRGPQGGQVRLSTMPRKADFQVELGAVRSEVDISIVDRLNSLLQPQKLVTTEM
MASHMYTSYNKHVSLHKAFTEVFLDDNRTPANTHVLITVNAPVLNLVVRFPIPDLRSDQE
RGPWFKRSLQKEVLYLELEDLEVKTEFTGGSSPEQTKMELTFRELVGKFQEEEDQTAARF
LRVSHTMDGNMTISDSGKFDWPRVVLKVNPTAVHSILERVTAEEDEGAEDQSPDEEEGGG
AHSLKDVCDFGKPEPSPFSSRRVMYENEEMVIPGNVAEMTEFQEKTMSNSRFILELCLPN
VQLSLPNKAFYEKLHNRINNDLLLWDPNAPSPVETVENMPYGAGLSVASQLINTAHYTND
SFSTFRSTGPEEEESGSEEETMHYYSPASEQCFRSRRKKKPKAQGKTSQSLFSVILTVNL
GLVALQTNAKQEDEAVLNNQHGEFWLEVKNGVLFSVTQFEGYKDQHYICFHNSNICLYHQ
GLVEGDTPVSDIKLPCRTRPHWLEPAIYPSEAAPDRASPSEGIGLEAHSMLSVAVKISTQ
NMERNVKEFLIAVGVKGATLQHLVVPPKLGWYDQIVDFLNVSDEPVLGYTPPASVTTLHL
HLWSCSLDYRPLYLPLRSLMVVETFSISSSVSLDHSSSTLRIILDEAALFLSDKSNAVSV
NLMRDYVQVVDMGTLELRITAVKPGVDREFTEPRFELRCSSDVIHIRTCSDSCAALMNLI
QYVASYGDLLPPPGPEAKGTSSKQRAKPEAPSRPLSQAPLLPEAEQQMLQDLMSEAMEEA
DSQYALALQHNGIHEEQNQDFDPPRSDLFLFPDESGNLSQEPSPTYLTLHSPLITAAPNL
ASENDDFCILETPGSTADDRDEEPVVNKLIPDSIEIKDNHFGQPLDSSDSSRGALNFPVP
EVRYLIREISVIWHLYGGKDFGSAMFTSSPARSRRECTPHSSPSQTPVRQGRGGGRAGGG
RGRNLDVLMEIQLSKVRFQHEVYPQAPVASGSAADQPKSRQVFIVQDLEIRDRLATSQMN
KFLYLYSSKEMPRTAHSNMLTVRALHMCPETGQAPQECCLRVSLMPLRLNVDQDALFFLK
DFFASLAAEVEMFSPPDQEALCVSMKKPSAPEVTCSFTKHGGGSQDPAPIISVPAQNRSS
LNGLTLSSNSNSGEAEAATASSFTDQPIFFREFWFTSEVPIRLDYHGKHVSMEQGTFAGI
VIGLTQLNCSELKLRRLCYRQGLLGVDKLFSYAINEWLNDIKKNQLPGLLGGVGPIHSLV
QLVQGFRDLVWLPIEQYRKDGRVVRGLQRGTASFGTSTAMAALELTNRMVRTIQAAAETA
YDMVSPGSDERETKRIKRFSHYRLSHQPVDLREGVANAYSVVKEGITDTALTIYDTATRE
HEQRGMTGAVGGVLRQLPPAVVKPLIMATEATSNVLGGMRNQIHPDAHQEESQKWRQGEE
NT seq
6303 nt
NT seq
+upstream
nt +downstream
nt
atgccttggccattttctgagtctataaagaagcgggcatgcagataccttttgcatcgg
tatttgggcaatttcctacaagagaagctgagcttagatcagcttagcttagacctctat
caaggcactggatcactggcacaagtgccgttggacaagtggtctttaaatgagatcctt
gagtcagcggatgcccccttcgaggtaatagagggcttcatccagaccatctctctgacc
gtaccatgggcgtccctgctgcaggagaactgtgccctggaggtcaaggggctggagatg
gtgttcagacccagaccacatatggcctcaggtatggaacccatgtattggtccagcttc
atgacgagcagcatgcagcttgccaaagagtgtctgagccagagactaacagatgacttg
ggggagagcttccagccattggagggattggagaagtttgcagagaccatagagacagtt
ctgagaagggtcaaggtgacttttttggacacggttctcagaatcgaacattttccagaa
aattccaaaacaggaatcgctcttgagatgcgtatcaacaagattgtttactgtgatgag
actggtgaggagagctccagtgtaaatgtgcaccaacccaccacatttgcacataaaaac
gtgcagctggagggagtcaccgtcttctgggatgagttctcagaggcggccagagccggc
ttcaagtcctcacccacccagcagtgagtctacattcaaataatcctctgtgtagttttg
aagcgtagagaactgatactcactcaccccttttctgcaccccctcaggagacagaggcc
aagctatcccccagctggaaccctagaatcatctgtgagccacacccccagttcacagag
cctgtttcctcagcaacaccctttgaacccatgcagattggtcaccttagtggcagaatt
gaactgtcgcttgtcctgaaacagaaccaaaccatgcctggagcaaagttggatgttgat
ggacagattagcacaatgattgtgctgctatctccacggcaagttcacctactcttggac
gtgtttggagttttttcaggctcagctgggccggagtgggggaaggacaagaggaaccgg
cccatgcagcaggaggatgagtatcggctccatatggagctaaaccgctgcctgaagaag
gagtccgaccctgacctcttcgagagccagaccaccagaactgtgtccagccgagaggat
gtcttcttctccatggctgacatggacatgtctcatagcctgtcgtccctccctcccctg
ggggaaccgcccactgtggacttggacctgtcactcaacagtaactactccccctcccca
ggagagtctcctggcaatgccacgatcctctgggactattatctggatgtgcccagacag
agggagaagcaggcccaggaaagcccattcctgacacgggattcaccactccaacacaag
ctgctgagacagacctcccacccaaccaaagcccacagtgatgagtccaggccggagctg
gtcttcaggctgactctggggagcctggctgtgtgtgttctccacattgaccccctgccc
ccgccggatgctgcccccagccccctggcccccatggctgctgacttcttcagggtggtc
tgctctgaccagcttcccgcagctgcattcatccagttaaggacagcttttgacgaagcc
tgcccctacgaccacctcaggtttgtggctcagggaatgaaggtgacctatgagcactgt
cagagctccagcttgcgcaccttcagcacagacgtgtccctgggtcagatggagctgctg
gagtgtctcttcccctctgaggctcccagcggtgggtcccagagaggggttcagtacacc
gagctcctgacatttgacacctctgtcacaactgaggcaccatctgccacctgcctccac
ctgctctacaaactggctgaacgcagagggccgcagggtggacaggtgcgtctgagtacc
atgcccaggaaggctgactttcaggtagagttgggggcagtccgctctgaagtggatatc
agcatcgtggaccgcctcaactctctgctgcagccacagaaactggtcaccactgagatg
atggcctctcacatgtacacgtcttataataaacacgtcagcttgcacaaggcctttaca
gaggtcttccttgatgacaaccgtactccagccaacacccacgtgttgataacagtcaac
gcccctgtgttgaacctggtggtgcgcttccctatcccagacctgcgctcggaccaggag
aggggcccctggtttaagaggtccttgcagaaggaggttctgtacctggagctggaggac
ctggaggtgaagaccgagttcacagggggcagctccccagagcagaccaagatggagctc
accttcagggagctagtcgggaagtttcaggaagaggaggaccagactgcagccaggttc
ctcagggtctcccacactatggatggaaacatgaccatctctgacagcgggaagtttgac
tggcccagagtggtgctgaaagtcaaccccaccgctgtccactccatcctggagcgtgtg
actgctgaggaggacgagggggctgaagaccaatccccagatgaggaggagggaggggga
gcccactcactgaaggatgtctgtgactttgggaagcctgaaccttcccccttctcctca
cgccgggtcatgtatgagaatgaggagatggtcattcctggtaatgtggctgagatgaca
gagttccaagagaaaaccatgagcaattcccgcttcatcctagagctgtgcttgccaaat
gtgcaattatcattacccaacaaggccttttatgagaaactgcacaacaggataaacaat
gacctgctgttatgggaccccaacgctccctcgcctgtggagacagtggagaacatgccg
tatggagcagggctgtctgtagccagccagctgatcaatacggcacactacaccaacgac
agcttcagcacgttccgctccactggccctgaggaggaggaaagtggatcggaggaggag
accatgcactactactcccctgcctctgagcagtgcttcagatctcgcaggaagaagaag
cccaaggcccagggcaagacctcccagagcctgttctctgtaatcctcactgtcaacctt
ggcctagtggccctgcagaccaatgctaagcaggaggatgaggcggttttgaataaccaa
catggagagttctggttggaggtgaagaatggtgtcctgttcagtgtgacacagtttgaa
ggctacaaagaccagcactacatctgcttccacaacagtaacatatgtctctatcaccaa
ggtctggtggagggagacaccccagtgtccgacatcaagctgccctgcaggacacgtcct
cattggctggagccggccatctacccctctgaggcagcccctgatagggcgtccccctct
gagggcatcggcctcgaggcccacagcatgctgtctgttgccgtcaagatctccacccag
aacatggagcgcaatgtcaaggagttcctgattgcagtgggagtgaaaggggccacactc
cagcacctagtggttcccccaaaactgggctggtatgaccagatcgtagacttcctgaat
gtgtctgatgagcctgtgttaggttacaccccccctgcctcagtcaccacccttcatctc
cacctgtggagctgctcactagattacagacccctgtacctgccactcaggtctctgatg
gtagtggagacattcagcatctctagcagtgtctccttagaccactcgtcctccactctc
aggatcattttggatgaagcagctttgttcctctctgacaagagcaatgccgtctctgta
aatctaatgcgagactatgtgcaggtggtagacatgggaacattagagctgaggatcact
gcggtcaaacctggagtggacagagaatttactgagcccagatttgagctgcgctgctcc
agtgatgtcatccatatcagaacatgttcagactcctgtgctgctctgatgaacctcatc
cagtatgtggccagctatggagacctactgccccctcctgggccggaggccaagggcacc
agctccaagcagagagcaaagccggaggctccaagccgacccctttcccaggctcctctt
cttcccgaggctgagcagcagatgctgcaggacctgatgagtgaggccatggaggaggca
gacagtcagtacgccctggcactgcaacacaatggaatacacgaggagcagaatcaggac
ttcgacccgcctcgctctgacctcttccttttcccggacgagagcgggaatctgtcgcag
gagccgagccccacgtacctcaccctccactcccccctcatcaccgctgcccctaacctg
gcctcagagaacgacgacttctgtattctagagaccccgggctccacggcagacgatcgg
gacgaggagccagtggtgaataagttgatcccagactctattgagatcaaagacaaccac
tttggccagcccctggacagcagcgactccagcaggggagccctgaacttccccgtccca
gaggtgcgctacctcatcagggagatctctgtcatctggcacctctatggagggaaggac
tttgggagcgcgatgttcacctcctctccagctagaagtcgtcgggagtgtaccccacac
agctccccctcccagaccccagtcagacagggcaggggtggaggacgggccggaggaggg
cggggcaggaaccttgacgtcctgatggagatccagctcagcaaggtgcggttccagcat
gaggtgtacccccaggccccagtggcctctgggtcggcggcggaccagcctaagtcccgg
caggtgttcatcgtccaggacctggagatcagagacagactggccacctcccagatgaac
aagttcctgtacctctactccagcaaggagatgccccgcacagcccactccaacatgctg
acagttcgggctctgcacatgtgtccagagacaggtcaagcaccccaggaatgctgtctg
cgagtctcactcatgccccttcgtctcaacgtcgatcaggatgcattgtttttcttgaaa
gacttctttgccagccttgctgctgaagttgagatgttctctccacctgatcaagaagcc
ctgtgcgtttcaatgaagaagccgtctgccccagaggtgacctgtagcttcactaagcat
ggaggtgggagccaggaccctgcccccattatctctgtgcctgcccagaaccgctccagc
ctcaacggcctcaccttatccagtaacagcaactctggggaagctgaggctgccactgca
tcatccttcactgaccagcccatcttcttcagagagttttggtttacctctgaagttcct
attcgtctggattaccatggaaaacacgtttcaatggagcagggaacatttgctggtatt
gtgattgggttgacacagctgaattgctccgagctgaaactaaggcgattatgctacaga
caaggactgttgggtgtggataagctcttttcctatgcaataaatgagtggctgaacgac
atcaagaagaaccagctgccaggactgctgggtggagtgggacctatccactcgctggta
cagttggtccagggatttagggatctggtgtggctcccgatagagcagtaccggaaggat
ggtcgggttgtacggggattgcagcgtggtactgcctcctttggaacctccacagctatg
gctgctctggagcttaccaaccgcatggtgcggactatccaggcagcagcagagacagcc
tatgacatggtatctccaggatccgatgagagggagacaaagagaataaaacggttctct
cattacagattgtctcatcagccagttgatctccgggaaggagtagccaacgcttacagc
gttgtaaaagagggaatcacggacactgctctgaccatctatgacacggccacgcgtgag
cacgagcagcgtgggatgaccggggcagtgggtggggtccttcgacagctccccccagct
gtggtcaagcctctcatcatggccaccgaggccacctccaacgtgctggggggcatgagg
aaccagattcacccagacgcacaccaggaagaatcccagaaatggcggcaaggggaggag
tga
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integrated database retrieval system
