Coregonus clupeaformis (lake whitefish): 121539356
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Entry
121539356 CDS
T08357
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04137
Mitophagy - animal
cclu04140
Autophagy - animal
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121539356
04137 Mitophagy - animal
121539356
04148 Efferocytosis
121539356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121539356
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121539356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
121539356
NCBI-ProteinID:
XP_041703711
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Position
25:complement(5546070..5561139)
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AA seq
765 aa
AA seq
DB search
MDTGVVPEKKSRVSSDRRKEKSRDAARCRRSKESEVFYELAQELPLPHSVTSNLDKASIM
RLAISYLHMRNLLSTDDKEEQQEESELDSQMNGSYLKALEGFLVVLSEDGDMVYLSENVN
KCLGLAQIDLTGLSVFEYTHPCDHEELREMLVHRTGTSKKSKEPNTERSFFLRMKCTLTS
RGRTVNVKSATWKVLHCSGHVRLHEAPAEQSPGGHKEPSVPYLVLVCEPIPHPSNIEAPL
DTKTFLSRHTLDMKFTFCDERITELMGYDPEDLLNRSVYEYYHALDSDHLMKTHHNLFAK
GQVSTGQYRMLAKRGGFVWVETQATVIYNSKNSQPQCVVCVNYVLSGIEEEKMVLSLEQT
EDMSPVKKELEEEEESSEAEVSPVLLMEEKSPELDVIKLFTQAMEAQPLASLYDRLKEEP
EALTLLAPAAGDTIISLDFSCPDSDILLKEVPIYKDVMLPSTSDKLALPLSLLPPSDQPL
VPSTSVDTKAGPDSSSTPGSHSFTEPDSPLDFCFPMESDISAAFKLDMVERLFAIDTGPK
TPFTSQVQFLSMAMEDLDLEMLAPYIPMDDDFQLRTLSPEEPLSCGPAQPLESSSLCSSV
HLTQEVHSYPGSLFIAPGSRTASPALAAPEPADSPRPASLLTKTVPQMDREISLRTMASQ
NPQRKRKMSLSQAVGIGGLLQDRPEPGKKLKVSELGHADAASNRTILLLPTDLASRLLGI
SSEGSGSPFTLPQLTRYDCEVNAPVVGRQLLLQGEELLRALDQVN
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggagttgtcccagaaaagaaaagcagggtgagctcggaccggaggaaggag
aagtcccgggatgcggcgcgatgcaggaggagtaaggagtcggaggtgttttacgagctg
gcccaggagctgcccctgccccacagcgtcacctccaacctggacaaggcctccatcatg
agactggccatcagctacctgcacatgaggaatctgctgagcacagatgataaggaggag
cagcaggaggagagtgagttggactcccagatgaatggctcctatctgaaggctctggag
ggcttcctcgtggtgctgtctgaggacggggacatggtctatctctctgagaatgtcaac
aagtgcttgggtctagcacagattgacctgacaggacttagtgtgtttgagtacacacac
ccctgtgaccacgaggagctgagggagatgctggtacacagaacagggacctctaaaaag
tccaaggaaccaaacacagaacgtagcttcttcttgcggatgaaatgtaccctcaccagc
agggggcgcactgtcaatgtcaaatcagccacctggaaggttcttcactgctcaggccat
gtgcggctccatgaagccccagctgagcagagccccggtgggcacaaggagccatccgtc
ccctacctggtgctggtctgtgagcccatcccccacccctccaacatcgaagcaccgctg
gacacaaagaccttcctcagccgccacacactggacatgaagttcaccttctgtgacgag
aggatcactgagctgatgggctatgatccagaggacctgttaaatcgctctgtgtatgag
tactaccatgccctggactcagaccacctcatgaagacccatcacaacttgtttgcgaag
ggccaggtgagcacaggccagtaccgcatgctggctaagagaggaggctttgtgtgggtg
gagactcaggccactgttatctacaacagcaagaactcccagccccagtgtgttgtgtgt
gtcaactatgtgctcagtggcattgaggaggagaagatggtgctgtctctggagcagacg
gaggacatgagtcctgtgaagaaggagctggaagaggaggaggagagctctgaggcagag
gtgtcccctgtgctcctgatggaggagaagagcccagagctggatgtgatcaagctgttc
acccaggcgatggaggcccagcccctggccagtctgtatgacagactgaaggaggaacca
gaggccctcacccttctggccccggccgctggagacaccatcatctccctggacttcagc
tgccccgactctgacatcctgctgaaggaggtgcctatctacaaggatgtgatgctgccc
tccaccagtgacaagctggccctgcctctctctctgctgccccccagtgatcagcccctg
gtccccagcacctcagtggacaccaaggctggtccagactcctccagcaccccaggcagc
cacagcttcactgagcctgacagcccactggacttttgtttcccaatggagtctgacatc
agtgctgcgtttaaactggacatggtggaaagactgtttgccatcgacacagggcccaag
actcctttcacctcacaggtacagttcctatctatggccatggaggacctggacctggag
atgttggctccatacatccccatggatgatgacttccagctgcgcaccctgtccccagag
gagcccctgtcttgtggcccagcccaacccctagagagctcttctctatgctcttctgtt
cacctcacccaggaggtccacagctaccctggctccctcttcattgccccaggcagccgg
acagcttccccagccctggcagccccggagccagcagatagccctcgccctgcttcctta
cttaccaagacggtgcctcaaatggacagggaaatctcccttaggacaatggcctcccag
aatccacagcgcaagaggaagatgtctctgtctcaggctgtcggaatagggggattgctc
caggaccgtcctgagccaggtaaaaagctcaaggtgtctgagctgggccacgctgatgct
gcctccaacaggactatactgctcctgcctacagacctggcaagccgtctgcttggcatc
tcctcagagggcagcggctcgcccttcacccttccacagctgaccaggtatgactgtgag
gtcaacgcccccgtggtgggtcgccagctcctgctgcagggcgaggagctgctgcgtgcc
ttggaccaagtcaactga
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