Coregonus clupeaformis (lake whitefish): 121539391
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Entry
121539391 CDS
T08357
Name
(RefSeq) homeobox-containing protein 1-like isoform X1
KO
K24885
homeobox-containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121539391
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
121539391
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
HTH_31
DUF494
HTH_37
HTH_24
Motif
Other DBs
NCBI-GeneID:
121539391
NCBI-ProteinID:
XP_041703792
LinkDB
All DBs
Position
25:4103142..4140743
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AA seq
586 aa
AA seq
DB search
MSRYTDEPRFTIEQIDLLQRLRRTGMNKPEILHALDTLDRLDHQHGHKFGRRPQPQTQPH
PAYQGPTPNCNTNTTSSPSSDNVAASSSTSTTATQTGYLGNGRGSGLSPSPSNNYDMSPP
PPVVVSAPVAMAVVAQNGHGVGGGGGELVAMTNGKLSPPRFPVSVSAVSGGVMGSSYGFE
ASEEELDVEDKVEELLRRDSAIIKEEIKAFLGNRRISQAVVAQVTGISQSRISHWLLQQG
SDLSEQKKRAFYRWYQLEKTTPGATLTMQPAPMALEDVVELRQTPPPICSTPGSFRLRRG
SRFTWRKECLSVMESYFNKNQYPDEAKREEIANACNAVIQKPGKKLSDLEKVTSLKVYNW
FANRRKEIKRRANIGNVYDPLGVCVCVCVHVSSDMLWRGLFFPEEAAILENHGIKVQSPG
GHSNSDEIDGNDFPDQGCEVPLFEKRVGTRPFSISRLDLSSPTQVPTLLPSWLAAWPGSG
RGGLAAQRASSLICRSLLSGAGLAQGAGMEGSRLTGVSWSVPSPPSLQDDSSTNHSNALE
HQDPIALAVEMAAVNHSILALATQAGGGLALGGTGSDIKTEVVEDN
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggtacaccgacgagcctcgtttcaccatcgagcagattgacctgctccagcgg
ctgaggaggacggggatgaacaagccagagatcctccacgccctggacaccctggacaga
ctggatcaccagcacggacacaagttcggacgccgtccccagccccagacgcagccccac
cccgcctatcaggggccgacgcccaattgcaacactaatacaacgtcttctccctcgtcc
gataacgttgcagcgtcctcatcaacgtccacgaccgccacacagactggttacctgggg
aatgggagagggagtggcctgtcaccgtcacctagcaacaactatgatatgtctccgccc
cctccggtggttgtatctgccccggtggctatggcagtggtggcgcagaacgggcatggg
gttggtggtggcggtggcgagctggttgccatgacgaacgggaagttgtctccaccgcgg
tttcctgtcagtgttagtgcggtgagtggcggcgtgatggggagcagctacgggtttgag
gccagcgaggaggaactagacgtggaagacaaagtggaggaactcctgagaagggacagt
gccataatcaaggaggagatcaaggcgttcctggggaacaggcgcatctctcaggctgtg
gtggctcaggtcacaggtatcagtcagagtcgtatctcccactggctgctgcagcagggc
tctgacctcagcgaacagaagaagagggccttctatcgctggtaccagctggagaagacc
acccctggtgcaactctgacgatgcaacccgcccccatggctctggaggacgtggtggag
ttgcggcagactccgccccctatatgctccacccccgggagcttccgtctgcgccgaggc
agtcgctttacctggaggaaagaatgtctgtctgtgatggagagttacttcaataagaac
cagtaccctgatgaagctaaaagagaggagatcgctaacgcctgcaacgctgtcatccag
aagccagggaagaagctgtctgatctggagaaggtcacgtctctgaaggtctacaactgg
ttcgccaaccgccgcaaagagatcaagagacgtgccaacataggtaacgtttacgacccc
ctcggggtgtgtgtctgtgtgtgcgtgcatgtgagctcagatatgttatggcgaggtcta
ttttttcccgaagaagcagcaatcctggagaaccatgggatcaaagtccagagccctgga
ggacactccaacagcgatgaaatcgacgggaatgacttccctgaccagggctgtgaggtc
cctctgtttgagaagagagttgggaccagacctttcagtatcagccgactagacctgtcc
tctcccacacaggtgcccaccctgctgcccagttggctggcggcttggcctggctcgggc
agggggggcttggccgcccagagggccagctctctgatttgccgctccttgctctcggga
gcgggtctcgctcagggggcagggatggaaggttccagactgacaggtgtgtcctggtct
gtcccctcccccccctccctccaggacgactcctccaccaatcacagcaatgccctggag
caccaggaccccatcgctctcgctgtggagatggcggcggtcaatcatagcatcctcgcc
ctggcaacgcaggcggggggaggattggccctgggtgggacaggcagtgacatcaagaca
gaggtggtggaggacaactag
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