Coregonus clupeaformis (lake whitefish): 121539431
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Entry
121539431 CDS
T08357
Name
(RefSeq) gamma-aminobutyric acid receptor subunit beta-1-like
KO
K05181
gamma-aminobutyric acid receptor subunit beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
cclu04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121539431
04082 Neuroactive ligand signaling
121539431
04519 Cadherin signaling
121539431
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121539431
Ion channels [BR:
cclu04040
]
Ligand-gated channels
GABA-A
121539431
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Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
Motif
Other DBs
NCBI-GeneID:
121539431
NCBI-ProteinID:
XP_041703859
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Position
25
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AA seq
486 aa
AA seq
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MCTALDRGRWGIFCIFLMVAMVCGAQSANEPSNMSFVKATVDKLLKGYDIRLRPDFGGAP
VDVGMSIDIASIDMVSEVNMDYTITMYFQQSWRDKRLSYTGIPLNLTLDNRVADSLWVPD
TYFINDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
SYGYTTDDIEFYWKGDNSVTGVENIELPQFSIIDYHIQSTKAVFATGSYPRLSLSFKLKR
NIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP
YVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGRGPHLQKKVAEKAAKTNNENKSRLESNK
VQVDAHGNILLTNLEIRNEMGGMGGMAGMTGAEMIGALNDPRATMFSYDSASIQYRKPMA
SRDLYGRPALDRPVGHKKSRLRRRASQLKVKIPDLTDVNAIDKWSRVIFPIAFTFFNLVY
WMYYVH
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtgtacggctttggaccgcggacgctgggggattttttgtattttcctaatggtcgcc
atggtctgcggcgctcaaagcgccaacgagcctagcaacatgtcatttgtgaaagcgacc
gtggacaaactgctaaaggggtatgacattcgtctgaggcctgattttggaggtgcccct
gtggacgttggaatgagcatagatatcgcaagtatcgacatggtttctgaagtcaacatg
gattacaccatcaccatgtacttccagcagtcctggagggacaagcgcttgtcctacaca
gggattcccctcaacctgacgctggacaacagggtggcagactcgctctgggtccctgac
acctacttcatcaatgataagaaatcctttgtgcacggggtcacagtgaagaacagaatg
atccgactgcatcctgacggaactgtactctacggcctcaggatcaccactacggcagct
tgcatgatggacttgcgtagataccctctggacgagcagaactgcaccctggagatcgag
agctatgggtacaccactgatgacatcgagttctactggaaaggtgataattcagtgact
ggggtggagaacatcgaacttccccaattctctattatagactaccacatccaatccaca
aaagcagtgtttgctacaggctcctacccgaggctctctctgagttttaagctgaagagg
aacattggctacttcatcctacagacctacatgccctccaccctgatcaccatcctatcc
tgggtctccttctggatcaactatgacgcgtctgcggccagagtcgctttaggtataacc
actgtgctgaccatgaccaccatcaacacccacttgagagagactttacccaaaatcccc
tatgtcaaggctattgacatctacctgatgggctgcttcgtgtttgtcttcctggccctg
ctggagtacgcgtttgtcaactacatcttcttcggtcgggggcctcacttgcagaaaaag
gtggcagagaaagcagctaaaaccaataacgaaaacaagagccgtctggagagtaacaaa
gtgcaggtggacgcccacggcaacatcctcctgaccaatctagagatccgtaacgagatg
ggtgggatgggtggcatggccgggatgaccggggccgagatgataggggctctcaatgac
ccgcgggccaccatgttctcctatgacagcgccagcatacagtaccgcaagcccatggcc
agccgagatctgtatggtcgaccggccctcgaccggcccgtcggccacaagaagagtcgt
ttgaggaggagggcgtcgcagctcaaagtcaagatccccgacctgacggacgtcaacgcc
atagacaagtggtcccgcgtcatcttccccatcgccttcaccttcttcaacctggtctac
tggatgtactatgtccactag
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