Coregonus clupeaformis (lake whitefish): 121539486
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Entry
121539486 CDS
T08357
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121539486
03015 mRNA surveillance pathway
121539486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121539486
03041 Spliceosome [BR:
cclu03041
]
121539486
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121539486
Spliceosome [BR:
cclu03041
]
Complex C
Other components
EJC/TREX
121539486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Aconitase_C
DUF5097
Motif
Other DBs
NCBI-GeneID:
121539486
NCBI-ProteinID:
XP_041703947
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All DBs
Position
25:27433038..27439552
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AA seq
693 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQVRRPTIPGVGGGRGRGINL
LRRGLSDIGGGPGGPPVKQRDIEGALLRLAGDQRGRRDSRHDSDAEDDDDVKKPVLQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQK
LEVQAEQERKKVEGERRELFEERRAKQTELRLLEQKVELAQLQEEWNVHNTKIVKYIRTK
TKPPIFFLPGRMCSATQKLLDESQKKMNVMFEERREAFAEHLNKMEARPRRQSQKDNALG
KDLKKEDREEGKPTGQVVKVTGNRFDVEMEEEDEATIEEEKKEEGVERKEDRKKKPVEKV
GEQESKKGGTKADEMEEAEEDSQDTRIVEFREVEQMEGTAVVREAEGQARDGDQKMEDSP
VEVGNEKGVEEQQLVKVEKEKEPLHDQDPTAVSDNQEKSIEMQPTEDEARTEVATPLLSE
PNPSVEVSDVASMAPEVQIPLLDAGTEPELLTTKQSQEADQGAIKQTTDAQPAQAQDDAA
PKEQVPPSEEASRGRKKSKDKKGGGGGRSSSSSSSSSSGSSSSGSSGSSSSGSSSMSSSS
SGSSSSSSSSRSRSRGKKDKKRRRPSERDRERKKAVVERSHKSSKGSGRESKGSKDKGSK
SDRKRTTSEGSRSGKRPSRGDRDRKSDRKEKRR
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgggatctttgcaagcccagcttgagaaagctaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggtcgggatcctaatgaattgagaccgggc
caagttagacggccaaccatcccaggtgttggaggaggtagggggcgaggaatcaacttg
ttgagacgtggactctctgacatcggcggtggaccgggaggacccccagtgaaacagagg
gatattgaaggggccctcctgaggctggccggtgaccagcgagggaggagagattcacgc
catgacagcgacgctgaggatgatgacgatgtcaaaaagccagtgttgcagtcatcagta
gtagctacctccaaggagcgtacgcgtcgagaccttatccaggatcagaccatggatgag
aggggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacattacagaaattc
aagcaggaatctaatgtggcaacggataggcaaaagaaacggattgagattgaacaaaaa
ttggaagttcaagctgaacaagagcgcaaaaaagtagagggtgaaagacgagagctcttt
gaggagaggcgtgccaaacagacagagctgagactgttggaacagaaagtggagcttgct
cagttgcaagaggagtggaatgtgcacaacacaaaaattgtcaagtacatccgcacaaag
accaagccacccatcttctttctccctgggaggatgtgctcagccactcagaagctctta
gatgagtctcagaaaaaaatgaatgttatgtttgaggagagacgtgaggcatttgctgag
catctgaataagatggaggctcggcctcggcgccagtctcagaaggacaacgctctgggt
aaggacctgaagaaagaagatcgagaggagggtaagcccacgggtcaggtagtcaaagtg
acaggtaaccggtttgatgtggagatggaggaggaagacgaggcaacaatagaggaggaa
aagaaggaagagggggttgagcgtaaggaggacagaaagaaaaagccagtagagaaagtc
ggggagcaggagtctaagaagggggggactaaagcagatgagatggaagaggctgaggaa
gacagtcaagacactagaatagtggagttcagagaggtggagcagatggagggtactgca
gtagtgagggaggctgaggggcaggccagggatggggatcagaagatggaggatagtcca
gtggaggtaggtaatgagaagggagtagaagagcagcaactggttaaggtagaaaaggaa
aaggagccccttcacgatcaggaccccacagctgtgtcagacaaccaggagaagagcatt
gaaatgcaaccaaccgaagatgaggcacgtacagaagtggccacacccctgctctcagag
cccaaccctagtgtggaagtctctgatgtagcatctatggcccctgaggttcagatcccc
ctgctggatgctggaacggagccagagctgctcacaacaaagcagagccaagaggctgat
caaggtgccataaagcagaccactgatgcccagcccgcccaggcccaggatgatgcggct
cccaaggagcaggtgccgccgagcgaggaagccagcaggggacgtaaaaagtcaaaggac
aagaagggaggtggtggtggcagaagcagcagtagctcatctagcagctcctccggctcc
tcgtccagcgggagctccggctcgtcctctagtggctcctccagcatgagcagctcctcc
agtggcagctcctcctccagctcctctagcaggagtcgcagccgggggaagaaggacaag
aagcgtaggaggccgtccgagagagaccgggagaggaagaaggcagtagttgagaggagc
cacaagtcgtccaagggcagtggtcgggaatctaaaggttccaaagataagggctccaag
tctgacaggaagaggaccacctctgaaggcagccggtcagggaagaggccttctcgcggt
gaccgggatcgcaagtcagataggaaggaaaaaaggcgttaa
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