Coregonus clupeaformis (lake whitefish): 121539607
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Entry
121539607 CDS
T08357
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121539607
Membrane trafficking [BR:
cclu04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121539607
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
121539607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WD40
Beta-prop_HPS5
WD40_Prp19
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Lgl_C
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
WD40_like
PEP5_VPS11_N
Synaptobrevin
RAB3GAP2_N
Motif
Other DBs
NCBI-GeneID:
121539607
NCBI-ProteinID:
XP_045063505
LinkDB
All DBs
Position
25:35801861..35857737
Genome browser
AA seq
1149 aa
AA seq
DB search
MKKFNIRKVLDGLTASSFSSASPQPGTSQNDVIQDTLLSEHFHLCKTVRHGFPYQPSSMA
FDPVQKILAIGTQSGAVRLFGRAGVECYCQHESGAAVIQLQFLVNEGALVSALADDSIHL
WNLRQKQPAILHTLKFNRERITFCHLPFQSKWLYIGTEKGNIHIVNIESFTLSGYVIMWN
KAIELSSKSHPGPVVHISDNPMDEGKILIGFECGTVVLWDLKCKKADYRYNYDEAIHSVA
WHHEGKQFTCSHSDGTLTTWNVRVPAKPTITITPHGKEPKDGKKPEPCKPILKVEYKTTR
AGDAFMVMSGGLSYDTGCRRACLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPYA
VVVLLEKDLVVIDLRQIGYPIFENPYPLSIHESPVTCVEYFADCPPELIPALYSVGSRQK
RQGYSKKEWPISGGNWGQGTLSYPEIIVTGHADGSIKFWDASAIMLQVLYKLKTAKVFEK
ALKGGKEEKPSTEIVDEDPFAIQTMSLCPESRMLCVAGVSAHVIIYRFSKQEITTEVVQL
LEVRMQCELNDVDSPDPAGEHPPTPSTPVPPSSSCPTQEGDLPETQPSTTDDGPRDNVPC
LKVRSTPLKQSPGYQVELVIQLVWVSGEPPQQITSLDVNSSYGLVVFGNSNGLAIVDYLQ
KTLLLNMGTSELYSPSDPYQRPSRSPRKTRQPSGALGDNNHGNNALEEKSNKSPTSVGST
SPTNSDDEHKQQRFIEKVKSKSRRFSKTVANDFAKMSRKISSPTDQKTDLDAKDRLFSRS
RSSSVTSIERESREAISSFHFSESFPRKTDSSGSPSLWVGTTQGTVLALALILPPTGDQR
LQQPVRVSSCGTLVRLKGAILTMAFLDSLGAVLPPSYEPWSEPNPPDEEKEKVRRRRPSS
PPPTQEGQDSQYAVVCSEKQAKVVGLPSQSCFFKHNITESSFVLRADVVQMAAGLCLACF
CANGHIMTLSLPSLRPLLDVNYLPLTDMRIARTLCFSNLGQAMYLTSPTEIQRITYSQET
CDNLQEMMGELFTPIETPEAPNRGFLKGLFGGGAQSLDREDLFGETAAGKASRSLAQHIP
GPQGMEGMKGAASGVVGDLARARIALDERGQKLGELEDRTAAMMASADSFSKHAHDMMLK
YKDKKWYQL
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagttcaatattagaaaagtgctggacggcttgactgcttcttcattttcttct
gcatcaccacaaccgggaactagtcaaaacgatgtgatccaagacactctactgtcggag
cattttcatctctgtaagactgtgcgccatggcttcccttaccagccctcctccatggcc
tttgaccctgtgcagaagattctggccatcgggactcaaagcggagctgtgagacttttt
ggccgtgcgggtgtggagtgttactgtcaacatgagagtggtgcagctgtcatccagctc
cagttcctggtcaatgagggggcgctagtcagtgccttagctgatgacagcattcacctg
tggaacctgagacagaagcagccagctatcctgcacactctcaaattcaacagggagagg
atcacgttttgtcacctgcccttccagagtaaatggctgtacatcggaacagagaaagga
aacatccacatcgtcaacattgagtccttcacactctcaggctacgttatcatgtggaac
aaagccatcgaactttcctccaagtcacaccctgggcctgtggttcacatcagtgataat
cctatggacgagggaaagattttgattggatttgaatgtgggactgttgtgttgtgggac
ctgaaatgcaaaaaagctgactaccgctacaattatgatgaggctatccactcagtagcc
tggcaccatgagggcaaacagttcacctgcagccactcagatggaactctgaccacatgg
aacgtacgcgtccctgccaagcctacaatcaccatcacaccacacggtaaggagcccaag
gatggaaagaagccagaaccatgcaaacctatcctcaaagtggagtacaaaacgacaaga
gctggggacgccttcatggtcatgtctggaggcctgtcctatgacacagggtgcaggaga
gcctgtttgacggtgatgcatgggaagagtactgccgtcctggagatggactatcccatc
gtagacttcctcacgctctgcgaaacaccttatcctaatgatttccaggaaccttatgct
gtagttgtccttttggaaaaggatttagttgtcatcgaccttagacaaattggataccca
atatttgagaacccgtaccctctgtcgatccacgagtctccagtgacgtgcgtagagtat
tttgccgactgccctcctgaactcatacctgcactttactctgtgggctcccggcaaaaa
agacagggttacagtaagaaggaatggccaataagtggtggtaactggggccaaggcaca
ctgagctaccctgagatcatcgtcactggacatgctgatggatcaatcaagttttgggat
gcttctgcaataatgctccaagtactgtacaagctgaagaccgctaaggtgtttgagaag
gctctaaagggtggtaaggaggagaagccaagcacagagatagtggatgaggatcccttc
gccatccagaccatgtcgttgtgcccagagagcaggatgctgtgtgtggctggagtctct
gcccacgtcatcatctataggttcagcaaacaggaaataaccactgaggtggtacagctg
ttggaggtgcgtatgcagtgtgagctgaatgatgtggattctccagaccctgcaggagag
catcctcccaccccatctaccccagtacccccctcctcctcctgcccaacccaggaggga
gacctccctgagacccagccctccaccaccgatgacgggccccgggataatgtaccatgc
ctcaaggtccggagcacccctctgaagcagtctccgggttaccaggtggagctggtcatt
cagctggtctgggttagtggggagccgcctcagcagatcaccagcctggatgtcaactcc
tcatacggacttgtggtgtttggcaacagcaacggtctggctatagtggactaccttcag
aagaccctcctcctgaacatgggcacatcagagctgtacagtccctcagacccctaccag
agaccgtctcggtcgcctcgcaagacacgacagccatctggggctctcggtgataacaac
catggaaacaacgctttagaggagaaaagcaacaaatcaccaacgtcagtaggctctacg
tcacccaccaattcagacgatgaacacaaacagcaaaggttcatagagaaggtgaagtcc
aaaagcaggcggttttccaagacggttgccaatgactttgccaagatgtcaaggaaaatt
agctcgcctacggatcaaaagacagacctggatgccaaggacaggttgttcagccgctcg
aggagctccagtgtgaccagtatagagcgggagtcccgcgaggccatctcctccttccac
ttcagtgagagtttccccaggaagacagacagcagtggtagccccagtctgtgggtgggt
actacccagggcactgttctggccctggctctaatcctgccacccacaggggaccagagg
cttcagcaacctgtcagagtatcatcttgtggtactctggtcagactaaaaggagctatc
ctgaccatggctttcctggactcccttggggcggtcctccccccttcctacgagccgtgg
tcggagcccaaccctccggacgaggagaaggagaaggtgaggaggcgccggccgtcctcc
ccaccccccacccaggagggtcaggacagccagtatgctgtggtgtgctcagagaaacag
gccaaggtggtgggccttccctcccagtcctgcttcttcaaacacaacatcacagagagc
tccttcgtgctgagagctgacgtggtgcagatggctgctggactctgcctcgcctgcttc
tgtgctaatggacacatcatgactctgagtctacccagtctcagaccactcctggatgtg
aactaccttcccctgaccgacatgaggatagcccggaccttgtgcttctccaacctgggc
caggccatgtacctcacctcccccaccgagatacagaggatcacatacagccaggagacc
tgcgacaatctacaggaaatgatgggagagttgtttacaccgatagagacgcctgaggct
cctaacagaggtttcctcaagggcctgtttgggggaggagctcagtccctggatagagaa
gacctgtttggtgagacggcggcgggtaaggcatctcgtagcctggcgcagcacatccct
gggccccagggcatggagggcatgaagggggcagcctcgggagtggtgggggacctggcc
cgtgcccggatagccctggacgagagggggcagaaactgggcgagctggaggacagaacc
gcagccatgatggccagcgctgactccttctctaaacacgctcatgatatgatgctgaag
tacaaagataagaagtggtaccagctctga
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integrated database retrieval system
