Coregonus clupeaformis (lake whitefish): 121539663
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Entry
121539663 CDS
T08357
Name
(RefSeq) WD repeat-containing protein 43-like
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121539663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
121539663
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121539663
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40
WD40_CDC20-Fz
Beta-prop_THOC3
WD40_Prp19
Utp12
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Gbeta
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_WDR90_POC16_2nd
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR41
EIF3I
Beta-prop_Aladin
ASA1
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_ACSF4
Beta-prop_HPS5
WD40_2
Beta-prop_SCAP
Tricorn_2nd
CFAP251_N
Beta-prop_IP5PC_F
MinC_C
Motif
Other DBs
NCBI-GeneID:
121539663
NCBI-ProteinID:
XP_041704265
LinkDB
All DBs
Position
34:complement(41654141..41693154)
Genome browser
AA seq
668 aa
AA seq
DB search
MMHQRACSVDDNTWFLANHADIGLIMATDGGSFSLGLPCVFSPKSRQYLAICAQDGRLRI
WNTDIKTLHQEYVPSAHLSATCTCIAWGPCRKAKEAPQRKKRRSEAGHVEKQADLLALGT
AVGSVIIYSTVKGALHCTLDGGHSGGVNCVQWHPEDCLLYSGSDDTHIVEWDLQTGKARC
KWKADRASVTSLCVSPDGKLLLSAGQTIKMWDLETKEVYRKFTGHSTAVTTLRFATSRPP
DSNGLYFLSGAAHDRLLSVWQVREDGKDKNSVVSFNLTDEPQHIDLFTSNSKEEAVRLAV
VCKDGQLHLFEHFLNGPCKKPLSPSCTVQMSGVEDSPVPVPLLAAALTTDTHSLLLAYGN
HLQPVIERVEVNTAERHVCLTRDVHTTLSLAMEMTVSKVKTPVVNAKSKVLVPGLSGHQA
HVQGTLGSEKRRKGTDAKEMSIAERLGEIDLSTEKGGVKGAPSLQTDNFAVLLVQGLESK
DANILNKVFQTRKDIFIKKTVARLPLPAVLPLVEEITKRMQGHPYTAVLMVRWLKAVLMQ
HTSYLCSLPDLVFQLGVLYHMIESRVKMFHKLTKLHGKLYLLMTQVVTSDSGIKDVDHTA
KLVYEEESSDEDEASGDEGLPDEDSDNWEEDEGMEVETMEDKAEEGMRTESKVNGDSDIE
PGNESEEE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaccaacgcgcctgctccgtagacgataacacgtggttcttggcaaaccacgca
gacattggtttaataatggcgactgatggaggcagtttttcgttggggctaccctgtgtt
ttctctccaaagtcacgccaatacctggctatatgtgctcaggatggcagacttcgtatt
tggaacacagatattaaaacgcttcatcaagaatacgtgccttcagcccacttgagtgcc
acttgtacctgcatagcttggggaccatgccgaaaggccaaggaggcacctcagcggaag
aagaggagatcggaggcaggacatgtggagaagcaggcagacctgttggctctgggcacg
gcggtgggcagcgttatcatctacagcacagtgaagggagcactgcactgcacactggac
ggaggtcacagtggcggggtgaactgtgtgcagtggcaccctgaggactgcctgctgtac
agtggctcagacgacacacacattgtggagtgggacctgcagacgggcaaggcgcgctgt
aagtggaaggcagatcgtgcctcagtgaccagtctgtgtgtgagtccggatggcaagctg
ctgctctcagcgggacagaccatcaagatgtgggacctcgagaccaaggaggtgtaccgg
aagttcacaggtcactccactgccgtgacgaccctgcgcttcgccacctcgcggcccccg
gatagtaacggcctctacttcctctccggggcggcccacgacagactcctcagcgtgtgg
caagtccgggaggatggcaaggacaagaactcggtggtgtccttcaacctgactgacgag
ccccagcacattgacctcttcacctccaacagcaaggaagaggcggtgaggctagcagtg
gtgtgtaaagacggccagcttcatctctttgagcactttctgaacgggccctgtaagaag
cccctgtccccctcctgtacagtgcagatgtctggggtggaggacagccccgtgcccgtt
cccctgttggctgcggccctaaccacagacacacacagcctgctgcttgcctacggcaac
cacttgcagcctgtcattgagagagtggaggtgaacacagcagagagacacgtctgcctg
acccgcgatgtccacaccaccctctccctcgccatggaaatgacagtttccaaggtgaaa
accccagtagttaatgccaagagcaaagtcctagtccctggactttccggtcaccaagcg
catgtccaaggaaccctgggatccgagaagaggagaaaaggcacagacgccaaagagatg
tctatagcggagcgactcggcgagattgatctgtcaacggagaaggggggcgtcaagggg
gccccttctctgcagactgacaactttgcggtgctgctggtgcagggtctggagagcaag
gacgccaacatccttaataaagtgtttcagacccggaaggacatcttcataaagaaaacg
gttgcacggttacccctccctgctgtcttgccattggtggaggagatcaccaagagaatg
caagggcatccatacacggcagtgctgatggtgcgatggctcaaggctgttctcatgcag
cacacctcctacttatgctcgttgccagacctggtgtttcagctaggagtgctgtaccac
atgattgagagtagagtcaagatgttccacaagctgacaaagctgcacggcaagctctat
ctgctcatgacacaggtggtgacaagcgacagcggcatcaaagacgtggaccacacggcc
aagctggtctacgaggaagagtcatctgatgaagatgaggcttcaggtgatgaaggtctt
ccagacgaggattctgataactgggaggaggatgaaggcatggaggttgagacgatggaa
gacaaggcggaggaaggcatgaggactgaatccaaagtgaatggcgattccgacatagaa
ccggggaacgagagcgaggaagagtga
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