Coregonus clupeaformis (lake whitefish): 121540059
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Entry
121540059 CDS
T08357
Name
(RefSeq) transcription intermediary factor 1-alpha
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121540059
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121540059
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121540059
Protein kinases [BR:
cclu01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
121540059
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121540059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
Bromodomain
PHD
zf-RING_UBOX
PHD-1st_NSD
zf-RING_5
zf-C3HC4
zf-RING_2
DUF7201
Motif
Other DBs
NCBI-GeneID:
121540059
NCBI-ProteinID:
XP_045063744
LinkDB
All DBs
Position
26:28227879..28246699
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AA seq
999 aa
AA seq
DB search
MDEGAESDDAVIIVENEAESMPVQENTNACNEQTGTLNFLDTCPVCHFNFHSREPKLLPC
LHSFCKKCLPSPSRNLAMPDTNSSTKPLNVIRCPVCRQECMEVDVMENFFVRDSVEASSS
TVERTVQLCMSCEDNTETTGFCVDCVEFMCATCVEAHQRVKFTKDHTIRQKGDVSQESVG
VSTQRPVFCEIHKQEPLKLFCETCDLPTCRDCQLLKHKDHNYQFLEDAYKNHKHYMEDMN
RQLQEKKKVIEDVSNSINNGLLQVDENRISVHNEIKKSICSLILEINRKGKILVNQLEGL
TKDHESGLKKQKEDIGYLSRHLDHVINFTKWATARNGGTALLYCKRLILFQIGNLLRAKC
NTSFVPQSTVRFQCRSGFWASNVDLGSLVVENVPGPQLGGFQGIPHQLPHPGQGPSGSPN
SLPPGLSQPRLPPHNHNTLAQLQMQVEKLAQQPHWQPQTPPWAWYQSMRLQRPPPGPLQG
GSPSQILPPMPQQGRRFIAPPAIHLSPTSTLPSPGYPPQAVQSLRGLVSSPSSYALKHMD
VFNPMPHFSHNAPLPSNGSLSSPHSRQQQMESAYHNKHPGGPVQIIRPNFPQTLPASLPY
RTAQGHHHAGLTAISCEEKPGTVSWKPLEMQQKAYGAGGSAAKRRRRSSPGPIIIIKDEP
EDDISCVQSNLRPNLPDSSTGIQAQTCRQDRGEQQVQISPQSTEEKAQTPPQPPRPSGDP
SQAPQQSHSLGTEQQLGSRGPAPEEDPNEDWCAVCQNGGELLLCCDKCPKVFHLSCHIPT
LLRLPSGEWFCSFCRDLSVPEVVYDCDISRLEPRTVKEEPDSEGGFCPVDKRKCERLLLK
MYCSELSADFQEARSPLIMPENQQTPKTPMVLSIVKSKLESRQSPCYQTPAEFVSDIRLI
FRNIAAFNEADTEVATAGRNLERFFEEQLKFLYPERMFPEVKSEVISPVTPPVSPPPPTT
PDEESSQHAKHQRRCSETQEVCTPTPAQLNSPKGEEETV
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggtgcagagtccgatgatgctgtcattattgtggagaacgaagcagagagt
atgccagttcaggagaacacgaacgcctgcaacgagcagacaggcaccttgaattttctg
gacacttgtcccgtgtgtcattttaactttcacagtcgagaaccaaaacttctgccatgt
ctccactctttttgtaagaagtgtttgccgtcgccttccaggaatttggcaatgccagac
actaacagctcgacgaaaccactgaatgtgattcgctgcccagtgtgcagacaggagtgt
atggaggtggatgtgatggagaacttctttgtgagggactcagtggaggcttccagcagc
accgtggagaggactgttcagctgtgtatgagctgtgaggacaacacagagactacaggt
ttctgtgtggactgtgtggagttcatgtgtgccacctgcgtggaggcccaccagagggtc
aagttcaccaaagaccacaccatcagacagaagggggatgtgtctcaagagtctgtgggt
gtttccactcagaggccagtgttctgtgaaatccacaagcaggagcccctgaagctgttc
tgtgagacctgtgatctaccaacctgtcgagactgtcagctactcaagcataaggaccac
aattaccagtttctggaggatgcctataagaatcacaaacattacatggaggatatgaat
cgtcagctgcaggaaaaaaagaaggtcatcgaagatgtgtcaaactccataaacaatgga
ctccttcaagttgatgagaaccgcatatcagttcacaatgaaatcaagaagtcgatctgt
agtttgatactagagatcaacagaaagggaaagattcttgtcaatcagcttgagggcctg
acaaaggatcatgagagcggtctgaagaagcagaaggaggatattggctatctgtccaga
cacctggatcacgtgatcaacttcacaaaatgggcgacagctaggaacggtggcacagct
ctcctgtactgcaaacgtttgattctgtttcagatcggaaacctcctgcgggctaaatgc
aatacctcgtttgtaccgcagagcactgtgcgtttccagtgtcgatcaggcttctgggct
tcaaatgtcgatctgggctcattagtggtggagaatgtcccaggcccccagctgggcggc
tttcagggcatccctcatcaactcccccatcctgggcagggcccctcaggctcccccaac
agcctgcccccaggcctctcccagccccgcctgcccccccacaaccacaacaccctggct
cagctccagatgcaggtggagaaactagcccagcagccccactggcagccccagacccca
ccctgggcctggtaccagagcatgcggctccagagaccccctccagggcccctccagggt
ggctctccctcccagattctcccccccatgccccagcagggccggaggttcattgccccc
cctgcaatccatctcagtcccaccagcaccctgccaagccctggatatccgccccaggct
gtccaatcactgagaggcctggtgagcagccccagcagctatgcactcaaacacatggat
gtattcaacccaatgcctcacttctcccacaatgcaccactgcctagcaacggcagcctc
agttctcctcactcacgacagcagcagatggagtctgcatatcacaacaagcaccctgga
ggccctgtccagataataagacccaacttccctcagaccctaccagcttccctcccatac
agaactgcacaaggacaccatcatgcaggactaactgctatatcctgtgaggagaaacca
gggactgtttcctggaaacctcttgagatgcagcagaaggcgtatggagctgggggatca
gctgccaagaggagacgaaggtcatcgcctggacccatcatcatcatcaaagacgagcca
gaggacgacatcagctgtgtacagagtaacctgagacccaacctcccagacagcagcacg
gggatacaggcccaaacctgtcggcaagatagaggggaacaacaagttcagatttctcct
cagagcacagaggaaaaggcccagaccccaccacagcctccacggccgtcaggggacccg
agtcaagccccacagcagagccactctctggggacagagcagcagctaggcagtcggggc
ccagctccagaggaggaccctaatgaggattggtgtgctgtgtgtcagaatggaggagag
ctgctgctgtgttgtgacaagtgtcccaaagtcttccacctctcctgccacatccccacc
ctcctcagattacccagtggggagtggttctgctcattctgccgtgacctgtcagtgcct
gaggtggtgtatgactgtgacatcagcagattagaacccagaacagtgaaggaggaacca
gactctgagggaggattctgccctgtggacaaaaggaaatgtgagagactgttgctgaag
atgtactgcagtgagctcagtgctgacttccaggaggctagatcccccttgataatgcca
gagaaccagcagaccccaaagacgccgatggttctgtccattgtgaagagcaagctggaa
tccaggcagagcccctgctaccagacacctgctgagtttgtatcagacatccgactcatc
ttcaggaatattgcagcattcaatgaggctgacactgaggttgccactgcagggagaaac
ctggagaggttctttgaggagcagctgaagttcctctaccctgagcggatgtttccagag
gtcaagtctgaggtcatcagtcctgtgacccctcccgtctctcctccccctcccacaacc
cctgatgaggagagctcccagcatgcaaagcatcagcgcaggtgctctgagacccaggag
gtgtgtactcctactcctgctcagctaaactcaccaaagggagaggaagagaccgtatga
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