Coregonus clupeaformis (lake whitefish): 121540101
Help
Entry
121540101 CDS
T08357
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03420
Nucleotide excision repair
cclu04115
p53 signaling pathway
cclu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121540101 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
121540101 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121540101 (ddb2)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121540101 (ddb2)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121540101 (ddb2)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
121540101 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
EIF3I
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
121540101
NCBI-ProteinID:
XP_045063831
LinkDB
All DBs
Position
26:complement(47852760..47867514)
Genome browser
AA seq
531 aa
AA seq
DB search
MDTHSLLKINERRFGRIPFTQSEMARAKKAPSEASKSKQKSRKQDGETSGAAGQTITEKL
RQKMDGKTTLKTGPVFPTTMTKGSVQKRSGPGSILHYIYQSTLGQSLHSQMRQCLQEPFV
RSLSSYKLHRTASPFDRRVTCLEWHPTHPTVLAVGSKGGDIVLWDYSVLNKTSFIQGKGA
GDFIGGMKFSPTDPSKVYLASGDGTLTVQSFQGGPATVLSGVQDCGHDHHNVCLWYCCVD
VSLSRQMLVTGDNIGRVLLLGIDGHQIFNEKLHKAKVTHAEFNPRCDWLMATASVDHTVK
LWDLRNIKDKNSFLHEMVHDKAVNSAYFNPVDCSKLLTTDQYDQIRVYSSSDWSTPQQII
QHPHRQFQHLTPIKASWHPLYDLMVVGRYPDERVCPGALRTIDIYDANTGELACQLLDHN
APGIISVNKFNPMGDVLGSGMGVNILVWNRGETLAGKQQRGELQQEAGVQVGRDRGQRGR
RREARRGGRRGEDEDDIGKLKKKLSSLEESSSSGTRTSRQHNSQTQKGQKK
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacacccactctttgctcaagatcaacgaaaggagatttggaaggatcccatttaca
cagtcagaaatggcacgggcaaagaaggctccttcagaagcatctaagtcgaagcagaag
tcgaggaagcaggatggagaaacctctggggctgcaggacaaaccatcaccgagaagcta
cggcaaaagatggacgggaagaccacattgaaaacagggcctgttttcccaaccaccatg
accaaaggttcagttcagaagagaagtggaccaggaagcatcctgcactacatttaccag
agtacactggggcagagccttcattctcagatgagacagtgtctccaggagccgtttgtg
cgttccctgtcctcctataagctccaccgtacagccagtcccttcgaccggcgggtcacc
tgtctggagtggcaccccacgcaccccaccgtcctggcggtcggctccaagggaggagac
atagtcctctgggactacagcgtgctcaacaagaccagcttcatacaagggaaaggagcc
ggggactttattggggggatgaagtttagcccgacggacccgtccaaggtctatctggcg
tccggtgatggtacactgaccgtgcagagctttcagggcggtccagcaacggttctgtcc
ggagtccaggactgtggacatgatcaccacaatgtctgtctgtggtactgctgtgtagat
gtgtcgttgagcagacagatgctggtgacaggagacaacataggacgagtcttattgctg
ggcattgatggacaccagatcttcaacgagaagttgcacaaggctaaagtgacccatgct
gaattcaaccctcgttgcgattggttgatggcgacagcgtctgttgaccacacggtgaag
ctatgggacctgcggaacatcaaagacaagaacagtttcctccacgagatggttcatgac
aaagctgttaactcggcctactttaacccagtggactgctccaagcttctgaccactgac
cagtatgaccagatcagggtgtactcctcttctgattggtcaactcctcagcagattatc
cagcacccacacagacagtttcagcacctcacaccgatcaaggcctcgtggcaccccctc
tatgacctgatggtggttgggcggtaccctgatgagagggtgtgtccaggtgccctgagg
accatcgatatctacgacgccaacacgggagagctggcatgccaactactggaccacaac
gcccctgggatcatatcggtcaacaagttcaatccaatgggagatgttttaggatctgga
atgggagtgaacatcctagtgtggaacagaggtgagacgttggctggtaagcagcagaga
ggagagctacaacaggaagcaggagtccaggttggcagagatagaggccagcgggggaga
aggcgggaggctcggaggggggggagacggggggaggatgaggacgacattgggaagctg
aagaagaagctgtcttccctggaagagtcctcctcctcggggaccagaacatccaggcag
cacaacagccagacacaaaagggtcaaaagaaataa
DBGET
integrated database retrieval system
