Coregonus clupeaformis (lake whitefish): 121540105
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Entry
121540105 CDS
T08357
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like
KO
K04957
hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121540105
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
121540105
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Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Ion_trans_2
Microp_apicomplexa_15
Motif
Other DBs
NCBI-GeneID:
121540105
NCBI-ProteinID:
XP_041704660
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Position
26:complement(44397012..44452724)
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AA seq
1278 aa
AA seq
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MDRFHSSMRKRLYSLPQNIVQRGSVSVMIDEGGEYGGGDKDTKKKSTSIRLKPLLLPGPP
SPASSCKRNGDRDPKSGASRDLETDVAGKTNLNGDCRLFKGSLSSITGRHTLGSDPAEQR
RLIPEIDASANEESYPGGETGSGAEQGAQGAVGRSAGTHRQSSVFDQSTLIKLEGTESIM
PDEAEQLYRAGFMHRQFGAMLQPGVNKFSLRMLGSERAVEHERERVKSAGFWIIHPYSDF
RFYWDLIMLFLMVGNLIIIPVGITFFKDEHTPPWIVFNVISDTLFLIDLVLNFRTGIVKE
DNTEIILDPQKIKIKYLKSWFVVDFISSIPVDYIFLIVETRIDSDFYKTARALRIVRFTK
ILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAMVRIVNLIAMMLLLCHWDGCLQFLVPM
LQEFPSDCWVTRNKMVNDTWGQQYSYALFKAMSHMLCIGYGMYPPVGLVDVWLTILSMIV
GATCYAMFVGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPAGMRQRVHDYYEHRYQG
KMFDEESILGELNEPLREEIVNFNCRKLVASMPLFANADPNFVTSVLTKLRFEVFQPTDN
VVMEGTVGRKMYFIQHGVVCVITKGTKETKLSDGSYFGEICLLTRGRRTASVRAETYCRL
YSLSVDNFNEVLEEYPMMRRAFETVALDRLDRIGKRNSVLRHKVAQNSGAVNLQENEIIQ
RIVQHDRDMAIQSNISPQSLDPPSPTSTPGVIWAPLVQGPLQAAAATTSLALAFSHSQLQ
TQLPPILFHRPLSISRSFKDPGGHHLQRGVFVGVSAAGSVGVPSYGSGAASPAGSVKFRS
GVDTPILASLRAQHLVSTASSMSPLSPMTSMYQPTTTNNFQAQHSGGSPIPLGQASIQGY
PPSSSSCTALLHQHHPCSPPGSNQQGASGRPTLDSGRFSAHSAPSGSTLSPLICSSVSPI
LSQLQQHASSYSHATSSHHIQRGMGSGEHQERAGLLLPPHSHCSYTSTSPSYTTQHHSSS
GFLSVPIPQQASVGGVGAPSSLVQHSLAGLQSSLHPTLHPGLHPSLHAGLLPQVLPEHSA
HSSHSALASLAQYGSGDGSPSCTPPVAPSPTFQSPVTGRTVLPHHHHSQLSHLSQLHSQP
SSAMGSHSSLTPQTSYPARVDRRAESLVDLFTQDVRTISTVSTSGSRSYLPQEGALSIPS
WGSGSSHPFSSPPMAGGSSNKLPGHATPLSHYTPPGSELPTPMNQGAPTSSHPNPSRPAT
PAKTSEADYRLSKLPSNL
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggataggtttcattcttccatgcgcaaaaggctgtacagcttgccgcaaaacattgtc
caaagaggctctgtctctgtgatgattgacgagggaggagaatacggtggtggcgacaag
gacacaaagaagaaaagtaccagtatcaggctgaagcctcttctccttcctggacctcca
tcccccgccagcagctgcaagagaaacggggacagggaccccaagagcggagcttccaga
gacttggaaacggacgttgccggtaagaccaacttaaacggggactgtcgcctttttaaa
ggtagcctctcttccatcactggtcggcacactcttgggtcagatccagcggagcagcgg
aggctgatccccgagatagacgccagcgctaacgaggagagttaccccggaggagagact
ggttcgggggccgagcagggcgcgcagggtgccgttggtcgcagtgctggcacacaccgc
caatcgtccgtcttcgatcagtccactttaatcaagttagaaggcaccgaatcgatcatg
ccagacgaagcagagcagttgtatcgggcaggcttcatgcacaggcagttcggagcgatg
cttcaaccaggagtcaacaagttctctctgagaatgttggggagcgagagggcggtggag
cacgagagagaacgcgtgaagtctgcaggattctggatcattcatccatacagtgatttt
aggttctactgggacctgataatgctgttcctcatggtggggaacctcattatcatccct
gtgggcatcaccttcttcaaggatgagcacactcccccctggatcgtcttcaacgtcatc
tcagacaccttgttcctcatcgacctggtcctcaacttccggacgggcatcgtcaaggag
gacaacacagagatcatcctggacccacagaaaatcaagatcaagtatctgaagagctgg
ttcgtggtggacttcatctcatccataccagtagattacatcttcctcatcgtggagacc
aggatcgactcagacttctacaagacggcccgggcgctgaggatagtgcgctttacaaaa
atcttgagtttgttgagactgctccggctgtccaggctcatcagatatatacaccagtgg
gaagagattttccatatgacctatgacctggccagtgccatggtgaggatcgtgaacctg
attgctatgatgctgctgctgtgtcactgggatggatgtctgcagttcctggttcccatg
ctgcaggagttcccttctgactgctgggtcaccaggaacaagatggtgaatgacacgtgg
ggccagcagtattcctacgccctgttcaaggctatgagtcacatgctgtgtatcgggtac
ggtatgtaccctcctgtcggcctggtggacgtgtggctcaccatcctcagcatgatcgtg
ggcgccacctgctacgccatgttcgtaggccatgcaaccgctctcattcagtcactggac
tcgtcccgacggcagtaccaggagaagtataagcaggtggagcagtacatgtccttccac
aagcttcctgccggcatgcggcagagggtccatgactactacgaacatcgctaccagggc
aagatgtttgacgaggagagcattctgggggagctgaacgaaccgctcagagaggagatt
gtcaacttcaactgtcgtaagctggttgcttcgatgcctctgttcgccaacgccgacccc
aactttgtgacgtcagtgctgaccaagctgcgctttgaggtgttccagcccacggataat
gtggttatggagggcaccgtcggcagaaagatgtacttcatccaacacggggtggtctgc
gtcatcaccaagggcaccaaggagaccaagctgtctgacgggtcctactttggagagatc
tgcctgctgactcgaggcagaagaacggccagtgttcgtgcggagacgtactgccgtctg
tactctctgtctgtggacaacttcaacgaggtcctggaggagtaccccatgatgagacgg
gccttcgagaccgtggctctggaccggctggaccgcataggaaagaggaactctgttctc
cgacacaaagtcgcccagaactcaggagctgtgaacctccaggagaatgagatcatccag
aggattgtacagcacgaccgagacatggctatccagagcaacatctctccccagtccctg
gaccccccatcccccacctccaccccgggggtcatctgggctccgctggtccagggcccc
ctccaggccgctgcagccaccacctccctggctctggccttctcccactcccagctccaa
acccagctccctcccatcctcttccaccgtccgctctccatctccaggtcgttcaaggat
ccaggaggccaccatctgcagaggggcgtgtttgtgggcgtgtctgcagctggaagtgtg
ggcgttcccagctatggctccggggctgcatccccggccggttctgtgaagttccgttct
ggagtggacactccaatattagcctcgctccgggcgcagcatctagtctccaccgcctcc
tccatgtctcctctgtcacctatgacctccatgtaccagcccaccacaaccaacaacttc
caggcccagcacagcggaggctctcccatccccctgggccaggcctccatccaggggtat
ccaccctcctcctcctcctgtacggccctgctccaccaacaccacccctgtagcccacca
ggttccaaccagcagggggcgtcagggaggcccaccctggactcggggaggttctcagcc
cactcagccccctctggttccaccctaagtcctctcatctgtagctctgtcagccctatc
ctgagccagctacagcaacacgcctcctcttactctcacgctaccagctctcaccacatc
cagagggggatgggctctggtgaacatcaggagagagcaggcctcctcctccccccccac
tcccactgttcctacaccagcaccagccctagctacaccacccaacaccacagctccagt
gggtttctatctgtacctatcccacaacaggccagcgttggaggtgttggagccccatcc
tccctggtgcaacacagtctggcaggtctgcagtccagcctccaccccaccctccacccc
ggcctccaccccagcctccacgccggcctcctcccgcaggttctcccggagcactctgcc
cattcttcccactctgccctggcctcgctggcccagtacggatcaggggatggctccccg
tcctgcaccccgccggtggcacccagccccaccttccagagcccagtgacaggcaggacg
gtgcttccccatcatcaccacagccagctcagccatctcagccagctccacagccaaccc
tccagcgccatgggctcgcacagctccctcaccccacagacgtcataccccgctcgggta
gaccgaagggcagagtccttagtggatctcttcacccaggatgtcaggactatctccact
gtttccacctctggctcacgcagctaccttccccaggaaggggctctctccataccttca
tgggggtctggttcttctcaccccttctcctctcctcccatggcagggggtagcagtaat
aaactcccaggccacgccacccctctgagtcactacactcccccgggatctgaacttcca
actcccatgaaccaaggcgcaccgacctcttcgcatcccaaccccagtcgccctgctacc
ccggccaagacctccgaggcagactacagactctccaaactcccctccaacctgtga
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