Coregonus clupeaformis (lake whitefish): 121540124
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Entry
121540124 CDS
T08357
Symbol
cacna1ha
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121540124 (cacna1ha)
04020 Calcium signaling pathway
121540124 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121540124 (cacna1ha)
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121540124 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
121540124
NCBI-ProteinID:
XP_045063587
LinkDB
All DBs
Position
26:complement(50246637..50391447)
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AA seq
2175 aa
AA seq
DB search
MTTDDSRLCYSVYSLTLVSTWFEHVSMIVILLNCVTLGMFQPCEDVTCQAEWCLILQVFD
DCIFAFFAVEMVIKMVALGIFGSKCYLGDTWNRLDFFIVMAGMMEYSLEGHNASLSAIRT
VRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLALCFFVFFIFGIVGVQLWAGLLRNRC
FMGEDFRTLYNLSLSVYYQQEETEEDPFICSAIRENGMLRCHDVPPYSEGGAECSLAAPP
PGHFLFGGEGGARDGCVNWNQYYNVCRPGNANPHKGAVNFDNIAYAWIAIFQVITLEGWV
DIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFAETKQRENALMREQRSRYM
SNDSTLASYSEPGSCYEEMLRYISHLYRKLTRRLQRIYTTWHSRRRKKVNPNGGGGGGGG
LGGSRSTSGNAPWLRPIHTLLQRHQHHHCRLSNGGHAPIATGGEELEMRSLPVPGRDPSV
TPGLGSSLLGRLNGGTNYPTILPSFICSFTPTHPHSPLPTHPHSPLPTHRHSPLPTHRHS
PLPTHPHSPLPTPPPPISENSLDPLSKLHRLMGQHSRPRLLYQLAGVVPSPLLLELLGCP
LCARALEGMELDLGYLEGSGGEAHALHDLPQGGEGRVGRGRRRCRAGLGAKRGCNRLVDL
WTGFRDRLKRIVDSKYFNRGIMTSILINTLSMGIEYHQQPVELTDILEISNIVFTCMFLL
EMMFKLLAFGLFGYIKNPYNIFDSVIVIISVWEIVGQADGGLSVLRTFRLLRVLKLVRFL
PALRRQLVVLMKTMDNVATFCTLLMLFIFTFSILGMHLFGCKFNLQMENGDTIPDRKNFD
SLLWAIVTVFQILTQEDWNVVLYNGMASTSPLAALYFVALMTFGNYVLFNLLVAILVEGF
QAEGDANRSDSDDEKRSDNDREEEKAGELKDTELKTYSLMMTANGHVANRDVLAPPIIMR
TAATPMPTPKSSLGPESILGEGLMYGGVGLGYSEAGIDCVDSRRGSAASMDPSAYDQRSL
SSPGQRSPLPPRGQCSVSGWGSRRSSWNSLNRSDTSGERKSLLSGEGGGEEEEEEEEEEE
GSLELLQVSSLGPSVTGEYGDCNGRSLHPVTYDPNKDNLSPDDDMEEDNLWFRVRRTLQS
HKPRWCREHKDWNLYLFSPQNSFRVWGKGLISHKMFDHVVLVFIFLNCITIALERPGIQP
HSTERVFLSVSNYVFTLIFLAEMTVKIVALGFCWGKQSYLKSSWNVLDGILVFVSLVDIL
VSLALTGGNRILGILRVLRLLRTLRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAF
FIVFGILGVQLFKGKFYHCEGLDTRNITTKSDCLLANYRWIRRKYNFDNLGQALMSLFVL
SCKDGWVNIMYDGLDAVGVDQQPVRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHK
CRQDQEEEEQRLREEKRLKILEKKRRSKEKDGAEAQQRPYYSDYSPVRLAVHTLCTSHYL
DLFITVIIAINVLTMSMEHYNQPQYLEEALKYCNYVFTCVFIIETLLKLVAFGLNRFFKD
RWNQLDLAIVLLSIMGITLEELKMNASLPINPTIIRIMRVLRIARVLKLLKMATGMRALL
DTVMQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNDSNPCEGLSRHATFENFGMAFL
TLFRVSTGDNWNGIMKDTLRECLPEERSCLTYLPLVSPVYFVTFVLMAQFVLVNVVVAVL
MKHLEESNKEAKEDAEMDAEIALEMERARRLSSASNASSLGGAYVGTRLHSPGQEEKRQC
SQEEELLSPRKMSVSRMHSLPNDSYMFPPVRPASATYPLQEDHTSLLHQASGSVTSVYSQ
PWEEQALLSSLSPPPPPAPLVLTPPHIAPPRPSPRGLRRQVAVKVDSVEVHSVDSVERQD
PLSTLPPLPLSLHPPPPRPPSLLSPCPPSPSSLSDPADEEVCHITSSARHWWDRHGSGRC
HSLSPYASPVSPASLRSRGSALSLLGAGLKGHDPRKGFSVDTQGFLDKPRRPDDQRRHST
EICPSPPEDPPLGEGAEVRSHGKKRMSPPCISIHPPRGSPGRAPSEEPPADCNTLLRRRT
PSYDLADTHTPTPFTFDQPEHIYVSGMSAGLSSNDPATSPSHFNRGAGFSFDEQENCPMR
AEPGTGTRKGIRQKA
NT seq
6528 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggacgatagtagactatgttacagtgtatattccttaaccctggtctctacg
tggtttgaacacgtctccatgatagtgattctcctgaactgcgtgactctggggatgttc
cagccctgtgaagacgtcacctgtcaggcagagtggtgcctcatactacaagtgtttgat
gactgtatctttgcatttttcgcggtggagatggtcattaagatggtggctctggggatc
ttcggttctaagtgttaccttggcgacacctggaaccgactggacttcttcatcgtcatg
gcagggatgatggagtattctctagaaggacacaacgccagcctgtcagctatcaggacc
gtgcgtgttctgcgaccgctccgggcgatcaacagagtccctagtatgcgtatcctggtg
actctgctcctagacactctccccatgctggggaacgtcctggcgctctgtttcttcgtc
ttcttcatcttcggcatcgtcggcgtgcagctgtgggcggggctactgagaaacaggtgc
ttcatgggagaagactttagaacgctctataacctgtcgttaagtgtgtactaccagcaa
gaggagacagaggaggaccccttcatctgctcagcaattcgagagaacggaatgttgcgt
tgccatgacgtcccgccctacagcgagggaggggctgaatgctcgctggccgcgccccct
ccgggtcacttcctgtttggaggtgagggcggggccagagacggctgtgtgaactggaac
cagtactataatgtctgtcggcccggcaacgccaaccctcacaaaggagcagtgaacttt
gacaacatcgcctacgcatggatagccatcttccaggtgataactctggaaggatgggtg
gacatcatgtactacgttatggatgctcactccttctacaattttatatattttatactg
ctcatcatagtgggctctttcttcatgatcaacctatgcctggtggtcatagccacccag
ttcgctgagacgaagcagcgtgagaacgcgttgatgcgtgaacagcgatcgcgctacatg
tccaacgacagtactctggccagctacagcgaaccaggatcctgctatgaagagatgctg
agatacatctcacacctctaccgcaaactgacccgacgattacaacgcatttacactacc
tggcacagtaggcgtcgcaagaaggtgaaccctaacggaggaggaggaggaggagggggt
ctgggaggcagccgcagcacgtccgggaacgccccctggctccgccccatacacaccctg
ctgcaacgtcaccagcaccaccactgtcggcttagcaacggaggacacgcccccatagca
acaggaggggaggagctggagatgaggtcacttccggtcccgggtcgtgacccctctgtg
acccctgggctggggtcatctctcctgggtcgtctgaacggaggaacgaactaccccacc
atcctgccctccttcatctgcagcttcaccccgacacacccccacagccccctccccaca
cacccccacagccccctcccgacacaccgtcacagccccctcccgacacaccgtcacagc
cccctccccacacacccccacagccccctccccacaccccccccgcccatctcagaaaac
agcttggaccccctcagcaagctgcaccgactcatgggacagcacagtcgtcctcggttg
ctgtaccagctggctggcgtggtaccctcccccctcctcctggagctgttgggctgcccg
ctgtgtgcccgcgccctagagggcatggagctggacctggggtacctggagggctctgga
ggggaggcccacgccctgcacgacctaccccagggaggagaggggcgcgtcggccgcggg
aggcgccggtgcagggcggggctgggggcgaagaggggctgtaacaggctggtggatctg
tggacagggttcagagacaggctgaaacgcatcgtagacagcaagtacttcaacagaggg
atcatgacatctatcctcatcaacactctcagtatggggatagaataccatcaacagccg
gtggagttgactgacatcctggagatcagtaacatcgtgttcacctgcatgtttcttctg
gagatgatgttcaagctgctggccttcggcctgttcggctacatcaagaacccctacaac
atcttcgacagtgtcatcgtcatcatcagtgtttgggagatcgttgggcaggcggacggc
ggtctgtcggtcctgcgtaccttccgtctgctgcgggtcctaaagctggtcaggttcctg
cccgccctgcgcagacagctggtggttctgatgaagaccatggacaacgtagccaccttc
tgtacgctactgatgctgttcatattcaccttcagtatccttggtatgcacctgtttggc
tgtaaattcaatctgcagatggagaatggagacaccatcccagaccgcaagaacttcgac
tctctgctctgggccatcgttactgtgtttcagatcctgactcaggaggactggaatgtg
gtcctgtataacggcatggcctccacctctcctctcgctgctctctactttgtagctctg
atgacgtttgggaactacgtcctcttcaacctgctggtggccatcttggtggagggcttc
caggctgagggagatgccaaccggtcggactccgacgatgagaagaggtctgataacgac
agggaggaggagaaggctggagagctgaaagatacagagctgaagacgtattctctgatg
atgacggccaacggtcacgttgcgaaccgcgacgttctggcccctcccataatcatgcgc
acggcggccacacccatgccgacgcccaagagctcattgggccctgagtccattctgggg
gaggggcttatgtatggaggggtgggtttagggtattcagaggcagggattgactgtgtg
gattctcgtcgcggcagtgctgcttccatggacccatcagcctacgaccagcgctctctg
tccagccccggccagcgctcgcccctccctcccagaggtcagtgttcagtcagtgggtgg
ggcagcaggaggtcaagttggaatagcctcaaccgcagcgacaccagcggagagaggaag
agtctgctgtcaggagagggaggaggggaggaggaggaggaggaagaggaagaggaagag
gggtccttagagctgttacaggtgtcctctctgggcccgtcggtaacaggggagtacggg
gactgtaacgggaggagtcttcatcccgtgacctatgaccccaacaaggacaacctttca
cctgacgatgacatggaggaggacaacctgtggttccgggtcaggagaacgctgcagagc
cacaagccacgctggtgcagagaacacaaagactggaacctctacctgttctcccctcag
aactcgttccgtgtctggggtaaaggtctgatctctcataagatgtttgatcacgtggtc
ctggtcttcatcttcctcaactgcatcaccatcgctctggagagacccggcatccagcct
cacagcaccgagcgagtgtttctgagtgtctccaactacgtgttcactctaatcttcctg
gctgagatgactgtcaagattgtagcgttggggttttgctggggtaaacagagctacttg
aagagcagttggaatgtgctggatgggatcctggtgtttgtctctctggtggacatcctg
gtttctctggccttgaccggagggaaccgcatcctgggaatcctcagagtattacggctg
ctacgcacactacgacctctcagggtgatcagtcgagccccagggctgaagcttgtagta
gagactctgatcacgtctctgagacccatcggaaacatcgtcctcatctgctgtgccttc
ttcatcgtgtttggaatactgggagtacagctgttcaaggggaagttctaccactgtgaa
ggcctggacaccagaaacatcaccaccaagtcagactgtctgctggcaaactaccgttgg
atacggagaaaatataacttcgacaacctgggacaggcactgatgtctctgttcgtgctg
tcctgtaaggatggatgggtcaacatcatgtatgacggcctggacgcagtgggagtagac
cagcagcccgtcaggaaccacaacccctggatgctcctctacttcatctccttcctcctc
atcgtcagtttcttcgtcctcaacatgttcgtgggcgtggtcgtggagaacttccacaag
tgtcgacaggaccaggaagaggaggagcagcggctacgggaagagaagaggctcaaaatc
ctggagaaaaagcgcaggagtaaggagaaggatggggccgaagcccaacagaggccctac
tattcagactactccccggtgcgtctcgccgtccacacgttgtgcaccagccactaccta
gacctcttcatcaccgtcatcatcgccatcaacgtcctcaccatgagcatggagcactac
aaccagccgcagtatctggaggaggctctgaagtactgtaactacgtgtttacctgtgtc
ttcatcatcgagaccctgctgaaactagtggccttcggactgaacaggttctttaaggac
aggtggaaccagttggacctggccatagtgttgttgtccatcatggggatcactctggag
gagctgaagatgaacgcatcgctgcccatcaaccccaccatcatcaggatcatgagagta
ctgaggatcgctagagtgttgaagctgttgaagatggctacagggatgagagctctgctg
gacactgtcatgcaggccctgccccaggtggggaatctgggtctcctcttcatgttgctg
ttcttcatctacgcagccctgggagtggagctgtttgggaaactggagtgtaacgacagt
aatccgtgtgagggtctgagtcgccacgcaacgtttgagaactttgggatggctttcctc
acgttgttcagagtctctactggagacaactggaacggaatcatgaaggacacgttgcgc
gagtgtcttccagaggagcgctcctgtctgacctaccttcccctggtgtcccctgtctac
ttcgtgaccttcgtcctcatggcccagttcgtgctggtcaacgtggtggtggcggtgttg
atgaaacatctggaggagagcaacaaggaggccaaggaggacgccgagatggacgccgag
atagccctggagatggagagagctagacgtcttagctccgcctctaacgcgtcatcgctg
ggcggggcctatgtggggacacgcctacactcacctggtcaggaggagaaacgtcagtgc
agccaggaggaggagcttctgtcaccaaggaagatgtccgtatccaggatgcattctctc
cctaacgacagctacatgtttcctcctgtacgacctgctagcgccacctaccctctacag
gaggatcacaccagcctcctgcaccaagcctcaggctctgtgacgtctgtttactcccag
ccgtgggaagaacaggctctgctgtccagcctctctccccctcctccccctgctccactt
gtcctcaccccccctcacatcgccccgccaaggccctcgcccagggggctgcgcagacag
gtagctgtgaaggtggactcagtggaggttcatagtgttgactcagtagagagacaggac
cccctctcaaccctcccccctctccccctgtctctccacccgcctcccccccggcccccc
tccctgctctccccctgccccccctctccctcctccctctcggaccccgccgacgaggag
gtgtgtcacatcaccagctctgcacgccattggtgggacagacatggaagtgggcggtgt
cactccctctccccctacgcctcccccgtctcccccgcctccctgaggagccgagggagt
gcgctcagtctgctgggggcgggcctaaaaggtcatgacccgaggaagggcttcagcgta
gacacccagggcttcctggataaaccccgtcgtcctgacgaccagcgacgacactccacg
gagatctgcccgtcccctccggaggacccgccgctaggggagggggcagaggtcagaagt
cacgggaagaagcggatgagcccaccctgcatctccatccaccccccacgtggctcacca
ggccgtgcgccctcggaggagccgccggcagactgcaacacgctgctgagacgcaggacg
ccctcctacgacctcgccgacacacacacgccgacgcctttcaccttcgaccaaccagag
cacatatacgtgagtggcatgtccgctggcctatcgagcaatgacccagccacaagtccc
tcgcactttaacagaggggcagggtttagcttcgatgaacaggagaactgcccaatgaga
gcagagcctggtactggtacgaggaaggggattcgtcagaaagcctaa
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integrated database retrieval system
