Coregonus clupeaformis (lake whitefish): 121540160
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Entry
121540160 CDS
T08357
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121540160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121540160
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121540160
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
121540160
NCBI-ProteinID:
XP_041704731
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Position
26:complement(7666272..7720226)
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AA seq
567 aa
AA seq
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MSAEMDKATDASRGDEEEWLYGDESEEKAEEEAPNRYVPGDSVKAQPTAEEVHENGVVKQ
DTGQEDEESDSDSEDDDDVCVTIGDIKTGGSSQPFSAFGATPVNLNIKAAGRTHASVGPK
AKGVDLDALGSVNGIPVLEVDMESFEEKPWRKPGSDLSDYFNYGFNEDTWKTYCEKQRRL
RMGYEGMNHASATKIMVHQERSAHGDRDGALSCFRSDYSSPSNHYNSGSSSRKPSSTIDV
IGGQTGTISRVEGRRRHNIEGNNIQVLSEPPSDAEPTPTKMPPFFPPNIPPPPFPPPPHN
VSSAPPLIPPPRIPINVPPPGYPPGAPPPSLIPTLERLHYKGSRFRRDRRRKDGDNDIDR
DREREEREHSYCPTRETGARRIHSGRSGGYDGRSAPPYPPFPPGVYPPPPPGSTAASWAG
VFDSAKAWEYYAQRDSERERHKERDRTRERGHEKEREREREHNPSSHAVNSEEERHRHRD
YGERGYERHHHERSSREKEERHREKRHRDKEEGRHKSSSSSSRRRHESEEGDSHRRHKHK
KVKRSREDKEPSQELSADQENQSEPTE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaaatggacaaagcaactgatgcaagcaggggcgatgaagaagaatggtta
tatggagatgagagtgaggagaaggcagaggaagaggcacctaataggtacgtgcctggt
gacagtgtaaaggcccagccgactgctgaggaggtccatgagaatggagtagtgaagcag
gatacaggccaggaagatgaagaaagtgacagcgacagtgaggatgatgatgacgtgtgt
gtaaccattggcgatataaagaccggaggctcgtctcagcctttcagtgcctttggagcc
acgccagttaatctcaacattaaggccgcagggagaacacatgcatcagttggccccaaa
gccaaaggagtggacctggatgcactgggcagtgttaacggaatccctgtgttggaggtc
gacatggagtcttttgaagaaaagccttggagaaagcctggctcggacctctctgactac
tttaactatggctttaacgaggacacctggaagacctactgtgagaaacagaggagacta
cgcatggggtatgagggcatgaaccacgcttcagccactaaaatcatggtccaccaggaa
cgttcagcccatggagatagggatggggccctttcctgctttaggtctgactactcctcc
cccagcaaccactacaattcaggctcctccagtagaaagccaagcagcaccattgatgtt
attgggggacaaactggtaccatcagccgggtagagggacgaagacgtcacaatatagaa
ggaaataacatccaggtgctttccgagcccccctctgatgctgagcctactcccactaag
atgccccccttctttccccccaacatccccccgcctcctttcccgcctccaccccacaac
gtcagctccgcccctccactcattcctccaccacggatccccatcaatgttcctccacct
ggctaccctcctggcgcaccccctccttctcttatccctaccttagaaaggctgcactac
aaggggagtaggttcaggagagacagaaggagaaaggacggagacaatgacatagatagg
gatagagagagagaagagcgagaacacagctactgcccaaccagagagactggagctagg
agaatacacagtggacgctctggaggctatgatggtcgctcagctccaccgtaccccccc
ttccctccaggtgtgtaccctcctcctcccccgggtagcacagcagcctcctgggctggg
gtattcgacagtgccaaggcctgggagtactatgcgcagcgggacagtgagcgagagcgc
cacaaggaaagagacagaaccagagaacgcggacacgagaaagaaagagagagggagaga
gagcacaacccttcctcccatgccgtcaacagtgaggaggagcggcaccggcacagggac
tatggggagagaggatacgagcgacaccaccacgagagatccagcagagagaaagaagag
agacaccgagagaagagacaccgagacaaagaggaggggagacacaagtcctcaagcagt
agcagcaggaggagacatgagagtgaggagggggacagtcatcggagacacaaacacaag
aaggtcaagaggagcagagaggacaaggagcccagccaggaactctctgctgaccaggag
aaccaatcagagcccacagagtaa
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