Coregonus clupeaformis (lake whitefish): 121540215
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Entry
121540215 CDS
T08357
Name
(RefSeq) zinc finger protein ubi-d4
KO
K13196
zinc finger protein ubi-d4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121540215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121540215
03036 Chromosome and associated proteins [BR:
cclu03036
]
121540215
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
121540215
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121540215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPF1-3_N
PHD
PHD_4
PHDvar_NSD
zf_RING_Vps8
zf-C2H2
zf-C2H2_4
PHD_2
Lar_restr_allev
zf-H2C2_2
Motif
Other DBs
NCBI-GeneID:
121540215
NCBI-ProteinID:
XP_041704837
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All DBs
Position
3:6454974..6459280
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AA seq
407 aa
AA seq
DB search
MAAAVDSVVKVLGEQYYKDAMEQCHSYNARLCAERSILMPFIDSQTGVAQSNCYIWMEKR
HRSAGMAAGQLYSYPSRRWRKRRRSHPPEDPRLAFPPIKSAELELGLKRDVVGAVDGSSL
EALLKGEPLERRGPPDPRAPEDNPATPEPVAATVSSHTSSGRIRKRVLDHDDYLDDLDDE
DFEDETPKRRGKGKSKGRGVANGKKKMEAAAAALEEQDKPYACDICGKRYKNRPGLSYHY
THSHLAEEEGEDREEIDSPPPRRHPEEHKTPKKGPNGLALPNDYCDFCLGDSAHNQKTGQ
SEELVSCSDCGRSGHPSCLQFTDVMMAAVKTYRWQCIECKCCNVCGTSENDDQLLFCDDC
DRGYHMYCLNPPMTEPPEGSWSCHLCLALLKDKASIYKQQSLTTEDE
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgtagatagtgttgtgaaagtgctcggggagcagtactataaggatgct
atggaacagtgccacagctataatgctcgtctgtgtgcggagaggagcatccttatgcct
ttcatcgactctcagactggtgttgctcaaagcaattgctacatctggatggagaagaga
cacaggagtgcaggcatggctgctgggcagctgtatagctatccatctcgacgctggagg
aagagacgtcggtcccaccctcctgaggacccccgtttggccttcccccctatcaaatca
gcggagctggagctgggtctgaaacgggatgtcgtgggcgcggtggacggcagcagccta
gaggccctgctgaagggggagcccctggagaggaggggcccgccggacccccgggccccg
gaggacaacccagccacacctgaacccgtggccgccacagtctccagccacacctcctct
ggacgcatccgcaagagggtgctggaccacgatgactacctggatgatctggacgatgag
gactttgaggacgagaccccaaagagacgagggaagggcaagtccaagggtcgtggagtg
gccaatggaaagaagaaaatggaggcagccgctgcagccctggaggagcaggacaaacct
tacgcctgtgacatctgtgggaagcgctataagaaccgtccgggcctgagctaccactac
acacactcccatctggcggaggaagagggggaggacagagaggagatagattcccctccc
ccccggcgccatcctgaggagcacaagactcctaagaaaggccctaacggtctggccctg
cccaacgactactgcgacttctgtctgggagactccgcccacaaccagaagaccggccag
tcagaggagctggtgtcctgctcagactgcggacgctcaggtcacccgtcctgcctgcag
ttcacagatgtgatgatggcagctgtaaagacgtaccgctggcagtgtatcgagtgcaag
tgctgcaacgtctgtggtacctcagagaacgacgaccagctgctgttctgtgatgactgt
gatcgaggataccacatgtactgcctcaaccctcctatgactgagcccccagaagggagt
tggagttgtcacctttgcctggcgctgctgaaggacaaggcatccatatacaagcagcag
agccttaccacagaggatgaatag
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