Coregonus clupeaformis (lake whitefish): 121540230
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Entry
121540230 CDS
T08357
Name
(RefSeq) replication factor C subunit 4 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03030
DNA replication
cclu03410
Base excision repair
cclu03420
Nucleotide excision repair
cclu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121540230
03410 Base excision repair
121540230
03420 Nucleotide excision repair
121540230
03430 Mismatch repair
121540230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cclu03032
]
121540230
03036 Chromosome and associated proteins [BR:
cclu03036
]
121540230
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121540230
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121540230
DNA Replication Termination Factors
ELG1-RFC complex
121540230
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121540230
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121540230
Check point factors
HRAD17(Rad24)-RFC complex
121540230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_16
AAA_22
AAA_assoc_2
AAA_30
AAA_11
Mg_chelatase
DUF815
RuvB_N
AAA_24
AAA_28
SLFN-g3_helicase
AAA_14
Gp44_lid
AAA_5
AAA_19
Cdc6_lid
ResIII
Kinesin
AAA_7
RPA_interact_N
ATPase_2
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
121540230
NCBI-ProteinID:
XP_041704862
LinkDB
All DBs
Position
26:complement(25495145..25503029)
Genome browser
AA seq
370 aa
AA seq
DB search
MDLQPVQNCYRRAMQAFLKGTSTQGTRPLKEKGAGTNAEKKQKSVPWVEKYRPKCMEEVA
FQEEVVAVLKKTIEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDE
RGIQVVREKVKRFAQLTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRT
TRFCLICNYVSRIIEPLTSRCSKFRFKPLANQVQEERLLEICDKENLKYSKEGIAALVKV
SEGDLRKAITFLQSAARLNTDNEITESAVIEIAGVVPPKMINNLLKICYKGTFEKLEIAV
RNMVDEGYAATQILNQLHEAIIEEELNDKQKSAITEKMAVVDKCLVDGADEYLQMLSLCS
VIMQQATQSN
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggatctgcaacctgtgcaaaactgctacagaagagccatgcaagcgtttttgaaaggt
acatctacacaaggcaccagacctctgaaagagaaaggtgccgggaccaatgcagagaag
aagcagaagtctgtcccctgggtagagaaatatagaccaaaatgtatggaagaggtggcg
tttcaagaggaggtggttgctgtgctgaagaagactatagagggtgctgatctcccaaat
ctgctgttctatggaccacctggaacaggaaagacctccaccatcctggctgcagccagg
gaactttatgggccagagctgtaccgacagagagtgctggagctgaacgcctctgatgag
agagggattcaggtggtccgagagaaagtcaagagatttgcccagctgactgtagcagga
caccgcactgatgggaaaccatgcccaccctttaagatcatcatcctggatgaggctgac
tcaatgaccaatgctgctcaggctgctctcagacgcaccatggagaaggagtcccggacc
acccgcttctgtctcatctgcaactacgtcagcaggattattgagcccttgacatccaga
tgctccaaattccgcttcaaacctctagccaatcaggtccaagaagagcgcttgctagaa
atctgtgacaaggagaatctcaagtactcgaaggagggaattgcagcgttggtgaaggtt
tcagagggtgatctgagaaaagctataacctttcttcaaagtgctgcacggctgaacaca
gataatgagatcacggagagtgcagtcatagagatagcaggggttgttccccccaagatg
atcaacaatttgcttaaaatctgttacaagggcacatttgaaaaactagagattgctgtt
cggaacatggtagatgaaggctatgccgccacacagatccttaaccagctacacgaagcc
atcatagaggaagagctgaatgacaagcagaagtctgccatcacggaaaagatggctgtg
gttgataagtgtttagtggatggtgcagatgagtacctgcagatgctgagtctgtgttct
gtgatcatgcagcaagccacgcagagtaactga
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integrated database retrieval system
