Coregonus clupeaformis (lake whitefish): 121540258
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Entry
121540258 CDS
T08357
Name
(RefSeq) leucine-rich repeat-containing protein 7-like isoform X1
KO
K24055
leucine-rich repeat-containing protein 7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121540258
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
121540258
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_14
LRR_8
LRR_4
PDZ
LRR_LRWD1
PDZ_6
PDZ_2
LRR_5
LRR_At5g56370
LRR_NXF1-5
LRR_EndoS
LRR_Zer-1
Motif
Other DBs
NCBI-GeneID:
121540258
NCBI-ProteinID:
XP_041704923
LinkDB
All DBs
Position
26:complement(23229983..23377186)
Genome browser
AA seq
1600 aa
AA seq
DB search
MDNYSHLQLQCLEMTTKRKIIGRLVPCRCFRGEEEVISVLDYSHCSLQQVPKEIFSFERT
LEELYLDANQIEELPKQLFNCQALRKLSIPDNDLSNLPTTIASLVNLRELDISKNGIQEF
PDNIKCCKCLSVVEASVNPITKLPEGFTQLLNLTQLFLNDAFLEYLPANFGRLSKLRILE
LRENHLKTMPKSIHRLSQLERLDLGSNEFTELPEVLEQIHNLKELWMDNNSLQTIPGCIG
KLRHLRYLDLAKNRIESLDTDISGCESLEDLLLSSNMLQHLPDTIGMLKKLTTLKVDDNQ
LTSLPNTIGSGRAKLGLSLLEEFDCSCNELESLPPTIGYLHNLRTFSADENFLVELPREI
GNCKNVTVMSLRSNKLEFLPDEIGQMTKLHVLNLSDNRLKNLPFTFTKLKDLAALWLSDN
QSKALIPLQTEAHPETKQRVLTNYMFPQQPRHDEDYQSDSDSFNPTLWEEQRQQRMTVAF
EFEEKKEEEDNSGKVKVEINLKRYPTPYPEDLKSMVKSVQNMVGKNQHPLSTGTNSSGTN
MESRKQEQYETPWPMPPKEVMEREMKEREREFNKTQMAEQGIIHNSAIDIPKRKDKEDLT
ESSEISLHRVVPKLPQPENTSSAVTASSCFCLIDSMGGSPNDIRISDMRPTLVEPPMYKP
KVVLLGKDKKESIDESDPDKMHCLNNSGSSATYSDYSPSQGSSGSSNPPGNVATLQAAGK
DGGVPQQHWTNRLAQQFPKPIETKPLLRDPRETPPSSTLQQRSERRPLSDTFDQWNDTSH
YDNTGFVSEEAPLETPSGSSSGNPMLGSKSCSASTSHGGRRPLMRQERIVGIPLELQDAP
HQHQHPSHQFHNVRNTPEAEMPQPPTPNPWQNWTRTPSPFEDRTAFPSKLSSPCNSPNPD
RKDFEQELPGTFPSTGTWGYLDSRNSGQGQGRSSQQANMSNMYQHVESKPTRPSSGAMVM
SKSSERLFPMMKEVKAKFKKSQSIDEIDMGSYKVYSIPVDTYSSSIENQGSVDRADMPAP
MEQSMSRSKSAPMLDDDDAYGTNSQQQKPAIPKKVYHFDQSFNPQGAMDMRNQQQERRAP
PPFPNTPEYVNHPGKTLPKELVSPRGYRGYPPMDQMFSYSQPSVNEENQPPQQQQPFPIP
SQRSRPGFLRRADSLVSSTELALFRRVQEAQEMQQKSDHYGRQHFKGMLEHQNSLASMAQ
QDQQYNKRNGRYEEDYSSYQEPKKPIMGYPTKSLTQRRPLSARSYSTETFGASQARPVSA
RPTMAALLEKMPPDYNLSTCTENIKSPDEMKMRTMQLQHKPDDMSSNMPVDWRQQLLRHI
EAKRIDRSAVLKHNTVNFGMLCSGGYAAPHASRSMTINFYNNMNKHENQTTQWLPLPNTP
SQQSNILDNGQEVVSPTTQWAPYSLGRRDVPPENIMKKLPDSLPNGLNYPQAGGHHPHPH
QSQTMIVTSASATPPHRSVRDQQYEGAINKISIQQYQSPLPMATTTRPQSARCLIQTKGQ
KSMDDFQEQFCLRIEKNPGLGFSISGGISGQGNPFKPSDMGIFVTRVQPDGPASNLLQPG
DKILKANGHSFLHMEHETAVSLLKNFQKTVDLVILRESTI
NT seq
4803 nt
NT seq
+upstream
nt +downstream
nt
atggacaattactcacatctacaactgcagtgtctggagatgacgactaagaggaagatc
attgggcgcctggtgccgtgccggtgcttccggggtgaggaggaggtcatctcagtgctg
gactactcccactgcagcctgcagcaggtgcccaaggagatcttcagcttcgagcgcacg
ctggaggagctctacttggacgccaaccagatcgaggagctgcccaagcaactatttaac
tgtcaggctctccggaagctgagcatacctgacaatgacctgtcaaacctaccaaccacc
atagccagccttgtaaacctgagggagttagacatcagtaaaaacggtattcaagagttc
ccagacaacattaaatgctgtaaatgcctatctgttgtggaggccagtgtaaatcctatt
accaagctcccagagggcttcacccagctcctcaacctgacacagctcttcttaaacgat
gcctttctggaatacctccccgccaactttgggagactttccaagttacggatcctggaa
ctgcgagagaaccacctgaaaacgatgccaaagtcaatacacagactgtcacagctggag
cgattagacttgggaagcaatgaattcactgaactgcctgaagtcctggagcagatccat
aacctaaaggagctgtggatggacaacaactcactgcagacaatacctgggtgtataggg
aagctgaggcatctgcgctacctggacctggctaaaaacaggattgagagcctggacact
gacatctctggctgtgagtccctggaggacctcctgctctcctccaacatgctgcagcat
ctgcctgacaccataggaatgttgaaaaagctcacaacgttgaaagtcgatgacaaccag
ctcacctcactgcctaacaccattggaagtggacgcgccaaattaggtttatcgctttta
gaggagtttgactgcagctgtaatgaattggagtcccttcccccgaccattggctacctg
cacaacctccgcacgttttctgctgatgagaacttccttgttgaactacccagggagatt
gggaactgtaagaatgtgacagtcatgtcgttgcgctccaataagctggagtttctacct
gacgagattgggcagatgaccaagctacatgttctcaatttaagcgacaatagattaaag
aaccttccattcacttttacaaaactaaaagatcttgctgctctttggctatcagacaat
cagtccaaggccctgatccccctccagacagaggcccatccagagaccaagcagagggtc
ctcaccaactacatgttccctcagcaaccacgacatgatgaggactaccagtcagacagt
gatagctttaaccccaccttatgggaggagcagcgccagcagaggatgactgtagccttc
gagttcgaggagaagaaggaggaggaggacaactctggaaaagtcaaggttgagattaat
ctgaagcgctaccctacaccgtacccagaggatctgaagagcatggtgaagtcagtgcag
aacatggtgggcaagaaccagcatcccctcagcactggtactaactcctctggtaccaac
atggagtcacgaaaacaagaacagtatgagaccccctggcccatgccccccaaagaggtg
atggagagagagatgaaagagagagaaagagagttcaacaagactcagatggcagagcag
ggcataatccacaactctgccattgacatcccaaagcgcaaggacaaggaggatctgact
gagagctcagagatttctttacatcgcgtcgttcccaagctgccacagccagagaatacg
tcatcggccgttacagcttcttcctgtttctgcctcatagattctatgggcggctctccg
aatgacatccgtatctctgatatgaggcccaccctggtggaaccgcccatgtacaaacca
aaagttgtattactagggaaagacaagaaagaatctatagatgagtcagacccagataag
atgcattgcctgaacaacagtggctcgtcagccacctactcagactactctccgtcccag
ggttcttctggctcctccaaccccccggggaatgtggccaccctgcaggctgctgggaag
gatggaggagtgcctcaacaacactggaccaacaggctggcccagcagttccccaagccc
attgagaccaagcccttactgagagaccccagagagacccctccctccagcacactgcag
cagcgcagcgagcgacgccccctcagcgacacctttgaccagtggaacgacacctcccac
tacgacaatacaggcttcgtgtctgaagaggctcctctggagacccccagtggtagcagc
agtggtaaccccatgctgggctcaaagtcctgcagcgcctccacctcccacgggggccgc
cggcccctcatgaggcaggagcgcatcgtgggcatccccctggagttgcaggatgcccct
caccaacaccaacacccctcccaccaattccataatgtccgcaacacgcccgaagctgaa
atgcctcagcctcccacccccaacccgtggcagaactggacgaggacgcccagccccttc
gaggaccgcacagctttcccctccaaactgagctccccatgcaacagccccaatcctgac
cgcaaggactttgagcaggagctgccgggcacgttcccctccacagggacgtggggttac
ttagactccagaaactcagggcaggggcaggggcgcagcagccagcaggccaacatgtcc
aacatgtaccaacatgtcgaatccaagcccactagaccaagctctggggccatggtgatg
agcaagagctctgagcgcctctttcccatgatgaaggaggtgaaggctaagttcaagaag
tcccagagtattgatgagatagacatgggctcctacaaggtgtacagcattcccgtggac
acctacagctccagcatagagaaccaggggagtgttgaccgtgcagacatgccagccccc
atggagcagagcatgtcccggagcaagtctgcccccatgctggacgatgatgatgcctac
ggaactaatagccagcagcagaagcctgccatccccaagaaggtctaccacttcgaccag
agcttcaaccctcagggggctatggatatgaggaatcagcagcaggagaggagggcccct
ccgcccttcccgaacacccctgagtatgtcaaccatccggggaagaccctgcccaaggag
ctggtgagccccaggggttaccggggttaccctcccatggaccagatgttctcctactct
cagccctcagtcaacgaggagaaccagccaccccagcagcagcaacccttccccattccc
agtcagcgctcccggcctgggttcctgaggcgggccgactccctggtcagctccacagag
ctggccctgttccgcagggttcaggaggcccaggagatgcagcagaagtcggaccactat
ggccggcagcacttcaaaggcatgctggagcaccagaacagtctggccagcatggcccag
caggaccaacagtacaacaagaggaatggcaggtacgaggaagactactcctcctaccag
gagcccaagaagcccatcatgggctaccccactaagagcctgacacagcggcggcctctg
tcggccaggagttacagcacggagacgttcggggcgtcccaggccaggcctgtgtctgcc
agacccaccatggctgccctgttggagaagatgcccccagattataatctgagcacttgc
actgagaatataaagagccctgatgagatgaaaatgcgcaccatgcagctgcagcataag
cctgacgatatgtcctctaacatgccagtagactggaggcaacagctgcttagacatata
gaggccaaacgaatagaccggagcgctgtccttaagcacaacacagtaaacttcggcatg
ctgtgctctggaggctatgctgcaccgcatgcaagcagaagcatgacaataaacttttac
aataacatgaataagcatgaaaaccaaacaacacagtggctacctctacccaataccccc
tctcaacagagcaatatattagacaacggccaggaggtggtctctcccactactcagtgg
gccccctactcactgggcaggagagacgtgcccccagaaaacatcatgaaaaagcttcct
gactctttgcctaacgggttgaattacccacaggcaggcggccaccacccccacccccac
caatcacagaccatgatcgtgacgtccgcatcggccacacccccacaccgctcggtgcgg
gaccagcagtacgagggcgccatcaacaagatctccatccagcagtaccagtctcctctg
cccatggccaccaccacccggccccagagcgcacgctgcctcatacagaccaaaggccag
aagagcatggacgacttccaggagcagttctgtctgcggatagagaagaatccaggttta
gggttcagcatctcagggggaatcagtggccaagggaaccccttcaagccttctgacatg
ggtatctttgttactagggtacagcctgatggaccggcctccaacctgctacagcctggg
gacaaaatactgaaggccaatggacatagttttttacacatggaacatgaaactgctgtg
tctcttctgaagaatttccagaaaactgtggacttggtaatcttaagggagagcacaatt
taa
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integrated database retrieval system
