KEGG   Coregonus clupeaformis (lake whitefish): 121540277
Entry
121540277         CDS       T08357                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B-like
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03250  Viral life cycle - HIV-1
cclu03272  Virion - Hepatitis viruses
cclu04144  Endocytosis
cclu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    121540277
   03272 Virion - Hepatitis viruses
    121540277
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    121540277
  09143 Cell growth and death
   04217 Necroptosis
    121540277
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cclu04131]
    121540277
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121540277
Membrane trafficking [BR:cclu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    121540277
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    121540277
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_5 AAA_14 RuvB_N AAA_22 IstB_IS21 DUF815 AAA_18 AAA_2 NPHP3_N nSTAND3 RNA_helicase AAA_33 AAA_17 AAA_24 PhoH Mg_chelatase AAA_28 AAA_7 Parvo_NS1 Csx12 ResIII NACHT TEBP_OB2-like bpMoxR Viral_helicase1 Sigma54_activat MCM
Other DBs
NCBI-GeneID: 121540277
NCBI-ProteinID: XP_041704968
LinkDB
Position
26:21756487..21763457
AA seq 438 aa
MANNNLQKAIDLASKAAEEDKAKNYEEALRLYQHSIQYFLHVVKYETQGDKAKQSIRAKC
AEYLDRAEKLKEYLKKKDKAPPAKPVKESGSDDKGNDSDEGEGDPEKKKFKNQLSGAIVM
EKPNIKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKA
VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFSLARENRPSIIFIDEIDSLCGSRSEN
ESEAARRIKTEFLVQMQGVGNDNEGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPEEHAR
SFMFKLHLGSTPSELTESDYVTLGKKTEGYSGADISVIVRDALMQPVRKVQSATHFKRVQ
GSSWNHPNLVVDDLLTPCSPGDPDAIEMTWMDVNGEKLMEPIVCMADMLRSLHNTKPTVN
EQDLDKLKKFTEDFGQEG
NT seq 1317 nt   +upstreamnt  +downstreamnt
atggctaataacaatttacagaaagcaatagatcttgcaagcaaggctgcagaggaggac
aaggctaaaaactacgaggaagctctccggttgtaccagcattccattcagtacttcctt
catgttgttaagtatgagacccagggagacaaggccaagcagagcatcagggcaaagtgt
gcagagtacctggatcgagcagagaagctgaaggaatacttgaagaagaaggataaggcc
cctccagccaagcctgtcaaagagtccggctctgatgataaagggaatgacagtgatgaa
ggtgaaggtgacccagagaaaaagaagtttaaaaatcaactctcaggggccatcgtcatg
gaaaagccaaacatcaagtggaatgatgtagctgggcttgagggtgcaaaggaggccctt
aaagaagctgtcatcttgcccatcaaattccctcacctcttcacaggaaagcgaactcca
tggagagggatcctgctgtttggccctcctggtacagggaagtcttatctggccaaggct
gtggccacagaagccaacaactccaccttcttctctatctcttcctctgacctggtgtcc
aagtggctgggggagagtgaaaagttggtgaagaacctgttcagcctggccagggagaac
aggccctccatcatcttcatcgacgagatagactctctgtgtggatccaggagtgagaac
gagagtgaagcagcccgccgcatcaagactgagttcctcgtccagatgcagggtgttgga
aatgacaatgagggagtcctggttctaggagccacaaacatcccctggaccctggactct
gctattaggagaaggtttgagaagcggatctacatccctctgcctgaggagcacgcccgc
tccttcatgttcaagctgcatctgggctccacccccagtgagctcactgaatcagactat
gtgaccctgggtaagaagacggaaggctactctggagcagacatcagtgtcatcgtaagg
gacgccctcatgcagccagtcaggaaggtgcagtcggccactcactttaaacgggtccaa
gggtcatcatggaaccatcccaacctcgtggtagacgacctcctgaccccatgctcacca
ggagatccagacgccattgagatgacctggatggatgttaatggggagaaactcatggag
ccgattgtttgcatggctgatatgctgaggtcactgcacaacaccaagccaactgtgaac
gagcaggacttggacaagctcaagaagttcacagaggactttggtcaggagggctaa

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