Coregonus clupeaformis (lake whitefish): 121540287
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Entry
121540287 CDS
T08357
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121540287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
121540287
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
RNases
121540287
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Motif
Other DBs
NCBI-GeneID:
121540287
NCBI-ProteinID:
XP_041704981
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Position
26:21324553..21334406
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AA seq
1278 aa
AA seq
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MLRSTGFFRGIDCPFNTDSCNVKSVKDGCERPYCHFRHRQQRPASYVSNDIRKSNEFYSK
QKEQCGYDPFNPEVVRPEEQQNGEPAAATVDMGALELELVNRAIEEVRSEVEREKKKLSR
IGDQEYDPTASSPKVVAKWPKPPALASHLAYDPGSYQMTTTADYNPTPRSRKYTLDSDSK
DNHASSMEYVPTSVTKTAVKKPVPRTQTPHLHSLPTSPKYSTIASCSKNKYTVDNSKPST
DMEYDPLSNYSAKIAGINKKNQRTGATLGEGKKRPHLSGTGKRSTDEEYVPTIKKPRQVI
PDLLKYTASFSESDEESSGTEYRPTSLSRLQRRKSSSGSVEEGKGEGTEGAVGGLKQQSW
SRESKKQQDTAHWESEDLENQEVVARQNDKPETEKVPGKTSQMKSSKVKKVHKSEKESSK
KSGGGSNSKKGAGDVEKVSDLKKSSHETAKKDSKNQGKREEKGKIKDTSIDKGKKEGKEE
KRSDGKSKIRTDKVKGESSKRENEREKRGGDSKKQKTSDKEKDSSKFKEHKNGKYDGNGR
EKDSKKVSKRSSNSSKDKVKKSSSSSSGKTGKVEQRSLSHVDLFGDESVEEKSEEDEEEE
TIVRKSAAAFKRGSLNRRKFLELTPSSSEDDDVGAEDDGGYDDMDDGGVDYSGLQVDMDF
DLDNDPMEECLRIFNESKDVKTEDKGRQAKPSKDSEDEDSTESNQTTLFPGQRKRVSHFS
AKGSTEATPKPPPYRRLTAQEICYQRMQIAQQQAVQLAAAVKTASTPRPSPSPSPLLGER
KRVAHRPTPLPSSSKSGLAEAKSAGSRVLSPTCTLPAGLSVKAQTSAGILSKTTTTIAQK
RVAHTPTMKSSAMKRPVIPTEFGAKVPTNVRQRYLNTFIDECMKFCPSEDVAFQMALQEE
VVVYDRSSSKNIYLNVAVNTLKKLRSKSSSPTSLIAMSPAVVGNRKAQSHEEVLGGRLAA
KTSFTINRTGKQQAEKLSGATLYRKLRDYLMTEELLQEHGYPRPHPERSGRAVVHNVPEK
KNVDPFAKVCCRCGAEYKINANGNCVHKEECNHHWGRLRRHKVSGGWETNYNCCSGAVGS
PGCSVSKQHVQDGRKESLDGYVQTFEKQLPPDGNGGVYALDCEMCYTRQGLELTRVTVIN
SELKVIYDTFVKPESKVVDYNTRFSGVTEEDLENARITLRDVQAVMLNMFSAESILIGHS
LESDLFALKVIHSTVVDTAIVFPHRLGSPYKRALRNLMADHLKRIIQDSVEGHDSSEDAC
ACMELMMWKIREDAKVKR
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgctgagatccaccggtttcttccgtgggattgactgcccgtttaacacggatagttgc
aacgtgaaaagcgtcaaagatgggtgcgaaagaccgtactgtcacttcagacaccgccaa
cagagaccggcgtcttatgtatcaaatgacattcgaaaatcaaacgagttttactccaaa
caaaaggagcaatgtggctatgacccattcaacccagaggtagtgagacctgaggagcaa
cagaatggggagcctgctgctgccacagtggacatgggtgccctggagcttgagttggtc
aatcgcgccatcgaggaggtacgcagtgaggtggagcgggaaaagaagaaactctcacga
atcggggaccaggaatatgaccctaccgccagttcccccaaagtggtggctaaatggcca
aaaccaccggccttggcatcccacttggcgtatgacccaggcagttatcagatgactaca
acagctgattataaccctacccctcgctccaggaagtacaccttggactctgacagcaag
gacaaccatgccagctccatggaatatgtgcccacctcagttaccaaaacagctgtgaaa
aagcctgttccccgaacacaaactcctcatcttcactctttgcctactagtcctaagtac
tccactattgcatcctgctccaagaataagtacacagtggataattctaaaccatccaca
gacatggaatatgaccctctctccaactattcagctaaaattgctggcataaataagaag
aaccagaggacaggtgctactctgggcgaagggaaaaagagacctcacctatcagggact
ggaaagcggtcaacagatgaggaatatgtgccaaccattaagaagccacggcaggtgata
ccagacctactgaaatacactgccagtttctctgagtctgatgaagagagctctgggaca
gagtatcgacccacctctctcagccgtctgcagaggaggaagagcagcagtgggtcagtg
gaggaagggaaaggagaggggacagaaggagccgtaggtgggctgaaacaacagagttgg
agtcgggagtctaaaaagcagcaggacactgcacactgggagtcagaggacttggagaac
caggaagtagtagctaggcagaatgacaagccagagactgaaaaagtgccaggtaaaacc
agccaaatgaagagcagcaaagtaaagaaggtgcataaatctgaaaaggagtccagtaaa
aagagtggtggtggtagtaatagtaaaaaaggagcaggggacgttgagaaagtaagtgat
ttaaagaaatcaagccacgaaactgcaaagaaggacagcaagaatcagggaaagagagaa
gagaaaggcaagataaaggatacatccatagacaaaggcaagaaggagggaaaggaagaa
aagagaagtgatggaaagagtaagataaggacagacaaagttaaaggggagtcaagcaag
agagagaatgagagagaaaagaggggtggggatagtaaaaaacagaagacttcagacaag
gaaaaggactcttctaagtttaaagaacacaagaatggtaaatatgacggcaatggaaga
gaaaaggactcgaagaaagttagcaaaaggagttctaacagcagtaaagacaaggtgaag
aaaagcagcagtagctcctctggtaaaacaggaaaggtggaacaaagatctctgagtcac
gtagatctgtttggtgatgagagtgtagaggagaaaagtgaggaggatgaggaagaggag
acaattgtgaggaagtcagctgctgctttcaagagggggagtttgaataggaggaagttc
ttagagctcaccccctcatcctcagaggatgacgacgttggtgcggaagatgacgggggc
tatgatgacatggatgacggtggggtggactactctggtctgcaggtggacatggacttt
gacctggataatgacccaatggaggagtgcttacggatcttcaatgaatccaaggatgtg
aagactgaggacaagggaaggcaagccaagccctctaaagattcagaggatgaggattcc
actgagagcaatcaaaccactcttttccccggtcagaggaaaagggtttcacatttctca
gccaaaggaagtactgaggcaaccccgaagcctccaccatacaggagactgactgcccag
gagatctgttaccagcgcatgcagatagcacagcagcaggctgttcagctggctgcagct
gtgaagactgcctccacacccaggccaagtcccagccccagccccttacttggggagagg
aagagagtagcccaccgccccacccctttaccatcctcctccaaatctggtcttgctgag
gcaaagtcggcgggcagcagagtgttgtcgcccacctgtaccctcccagcaggtctctct
gtgaaggcccaaacatctgccgggatcctgtcaaagaccaccaccactattgcacagaag
agggtggcacacactcccacaatgaagagctctgcaatgaagcggccagttattcccacc
gagtttggggccaaagtgcccaccaacgtccgccagcgatacctcaacacatttatagat
gagtgtatgaagttctgcccctctgaagatgtggccttccaaatggccctgcaggaggag
gtggtggtgtatgaccggagcagcagtaagaacatctacctcaacgtggcagtcaacaca
ctgaagaagctacgcagcaagagcagctcccccacctcacttattgccatgagccctgca
gtggtggggaacaggaaggcccagtcccatgaagaagtgctgggggggcgccttgctgcc
aagaccagcttcaccattaataggacaggcaagcaacaggcggagaaactcagtggtgct
actctgtacaggaaactgagggactatctgatgacggaggaactgctgcaggagcatgga
taccctaggccacaccctgagcgctcaggtcgagctgtggtccacaacgtcccggagaag
aagaacgttgacccgtttgccaaggtgtgctgtcgatgtggggccgagtataagatcaat
gccaacggcaactgtgttcacaaggaggagtgtaatcaccactggggccgtctgcgtagg
cataaagtgtcgggaggctgggaaaccaactacaactgctgctcaggagctgtgggctct
cctggctgctccgtgtctaagcaacacgttcaggacggacgcaaagagtctttggatggc
tacgttcagacctttgagaaacagcttcccccggacggaaacggtggagtctatgccctg
gactgtgagatgtgctacacaaggcagggtctggagctgaccagggtgactgttatcaac
tctgagctgaaagtaatctacgacacatttgttaaacctgaaagcaaagtggttgactac
aacacacgattttcgggtgtaacagaggaagacctggagaatgccaggatcaccctgaga
gacgtgcaggcggtgatgctcaacatgttcagcgctgagtccatcctcataggacatagc
ctggagagtgacctcttcgccctcaaggtcatacacagcactgtagtggacacagccatc
gtgttcccccatcgcctgggctctccctacaagcgggccctgaggaacctcatggcagac
cacctcaaacgcatcatacaggacagcgttgaaggtcatgactccagtgaggacgcctgt
gcctgcatggagctcatgatgtggaagatccgagaagacgccaaggtgaagaggtga
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