Coregonus clupeaformis (lake whitefish): 121540306
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Entry
121540306 CDS
T08357
Name
(RefSeq) procollagen galactosyltransferase 2 isoform X1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00310
Lysine degradation
cclu00514
Other types of O-glycan biosynthesis
cclu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
121540306
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
121540306
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
cclu01003
]
121540306
Enzymes [BR:
cclu01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
121540306
Glycosyltransferases [BR:
cclu01003
]
O-Glycan biosynthesis
O-linked Gal type
121540306
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_tranf_2_4
Glyco_transf_25
Anp1
Motif
Other DBs
NCBI-GeneID:
121540306
NCBI-ProteinID:
XP_041705014
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Position
26
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AA seq
622 aa
AA seq
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MMLGMMPAVGAVGVGLLCALLVALMPGAMSEMATLVQDPVRPESSLLKPKIMIAILARNA
AHSLPHYLGCIDRLDYPKERIAIWAATDHSVDNSTAMLREWLKQAQDQYHYVEWRPMEEP
KSYTDEWGPKHWPPSRFNHVMKLRQAALKAARERWADYILFADSDNLLTNPRILNLLMAE
NLTLVAPMLESRSLYSNFWCGITPQGYYKRTPDYQPIREWKRLGCFAVPMMHSTFLLDLR
RDASRELAFYPPHPDYSWAFDDIMVFSFSARQADVQMYVCNREHYGFLPVPLKASQNVDE
EKESFTHTIAEAMIDHNIAPSEYLYNPHMPQDKMGFDEIFLINLKRRLDRRQRMLSTMAS
LGLQATLTDAVDGKALNTSQLQTLGIEMIPGYKDPYSGRVLTRGEIGCFLSHHSTWVQMA
ERGLSKVLVLEDDVRFEPRFKRRMMTIMEEVEKAQLDWDLIYVGRKRMQVRQPERSVEGV
NNLVEADYSYWTLGYALSAQGAKKLLAAQAFSKMLPVDEFLPVMFNKHPNSDFMSHFEPR
DLKAFSVEPLLLYPTHYTGEPGYVSDTETSTIWDDEATATDWDRQYQHARKTEQQGRIHT
VAQNSVTGDSPPPAARSTRDEL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgggaatgatgcctgcggttggagccgtgggagtcgggctgctctgcgcactg
cttgtcgccctcatgccgggtgccatgtcggaaatggcgactctggtgcaggacccggtc
cgacccgaatcgtcccttctgaagccaaaaatcatgatcgccattctggctcgcaacgcg
gcgcacagcctgccgcactacctgggctgcatcgacaggctagactacccgaaggagcgg
atagctatatgggcagcgacagaccacagtgtggacaacagcacagccatgctgagggag
tggctgaagcaggcccaggaccagtaccactatgtggagtggagacccatggaggagccc
aagtcctatacagatgagtgggggcccaagcactggcctccgtcccgcttcaaccatgtg
atgaagctgaggcaggctgctctgaaggcagcacgggaacgctgggcagattatatactg
tttgcagacagtgataacctgctgaccaaccccaggatcctgaacctgctcatggctgag
aacctgactctggttgctcccatgctagagtcccgctctctctactccaacttctggtgt
ggcatcactccccagggttactataagcgtactccagactaccaaccaatcagggagtgg
aagcgtctgggttgcttcgccgtacccatgatgcactctaccttcctgttggacctgagg
cgtgacgccagtcgggagctggccttctatccccctcaccctgactacagctgggccttc
gatgacatcatggtgttctccttctccgcccgacaggcagatgtgcagatgtacgtgtgt
aacagagaacactatggcttcctgccggttccactgaaggcctcgcagaatgttgacgag
gagaaggagagcttcacacacaccatcgctgaggccatgattgaccacaacatagcgccc
tcagagtacctgtacaatccccatatgccgcaggacaagatgggctttgatgagatcttc
ctgatcaatcttaaacgtcgtctggacaggagacagaggatgttgagcaccatggcctct
ctgggtctgcaggccaccctcactgacgcagtggatggcaaggctctgaacacttctcag
ctgcagacgttgggtatagagatgattccaggttataaggacccatactctggccgtgtt
ctaaccagaggagagataggctgcttcctcagccaccactccacctgggtacagatggcg
gagcgtggtctttccaaggtgctggtgctggaggatgatgtgaggtttgagcccagattt
aagaggcgaatgatgaccatcatggaggaagtagagaaggcccagctggactgggatctc
atctatgtggggcgtaagcgtatgcaggtgcgtcagccggagcgttcagtggaaggggtt
aataacttggtggaggcggactactcttattggacgctgggctatgctctgtcagcgcag
ggcgccaagaaactgctggctgctcaagccttcagcaagatgttacctgttgatgagttc
ctccccgtcatgttcaacaaacaccccaattctgacttcatgtctcactttgagcctcgg
gacctgaaggccttctctgtggagcccctcctcctctaccccacccactacacgggcgag
ccaggctatgtcagcgacacagagacctccaccatctgggacgacgaggccactgccacc
gactgggaccgccagtaccagcacgccaggaagacagaacagcaaggccgcatccacacc
gtggcccagaatagtgtgacgggagactcacctccacccgctgcccgctccacacgagac
gaactctga
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