Coregonus clupeaformis (lake whitefish): 121540341
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Entry
121540341 CDS
T08357
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121540341 (upf3b)
03015 mRNA surveillance pathway
121540341 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121540341 (upf3b)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121540341 (upf3b)
mRNA cycle factors
P-body specific factors
121540341 (upf3b)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
RRM_SRRT
Motif
Other DBs
NCBI-GeneID:
121540341
NCBI-ProteinID:
XP_041705083
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All DBs
Position
3:complement(10221362..10233506)
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AA seq
465 aa
AA seq
DB search
MKEDKENTRPMEKMMEIKCEDTEKTEKPKPEKKEAMTKIIIRRLPPSITKEELEDQLQPL
PEVDYLEFFSNDSSMYPHVFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKIAKKRSKKKDAKSGTIDEDADYKKFLEIYNGDDEKFTSTPETLLEEIEAKTKELVA
KKTTPLLDFLKNKQRIREEKKEERRRRELERKRQRDDERRKWREEDRRKRKEAEKFKKGD
KPAEKDKDQAKEEPKIKLLRKPDRGDDVDVEKPKEKSKKPEKDKMKDDRAPGGPDMKKRQ
NHETREDRGSRKADEDGHKDFRERDVERNRDRERDRERRQKEKERIRRQDEDRRRRRERH
DGENSYRKPDEEGKMEKGDRVWERRKGENAGDSVSHTDKPKKSEETLRDEKAKRDRLRNK
DRPAIQLYQPGARNRGARGGGGGESHAGERKSEGETKRSQEKGDE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggacaaagaaaacactcgtccgatggagaaaatgatggagataaaatgcgaa
gatactgaaaaaacggagaagccaaagccggagaagaaagaagcaatgacgaagatcatt
atccgacgtctgcctcctagcataaccaaggaggaactggaggatcaattgcagccactt
ccagaagtggactacctcgaatttttctccaatgacagcagcatgtacccccacgtcttc
gccagagcatacatcaacttcaagaatcaggaagatattgtccttttcagagaccggttt
gatggatatgtgttcattgataatagagggcaggagtatccagccattgttgaatttgct
ccttttcaaaagattgccaaaaaaaggagtaagaaaaaggatgccaaaagtggaacgatc
gatgaagatgctgactacaagaaattcctggagatttataatggtgatgatgaaaaattt
acatccactcctgagacgctactggaggaaatcgaggctaaaacaaaggaactagtagct
aagaaaacgactcccctcttggacttcttgaagaacaaacagagaatccgtgaggaaaag
aaagaggagaggaggagacgggagttagaacgtaagcgccagcgggacgacgaacgtcgg
aagtggagggaggaggacaggaggaagcgcaaagaagccgagaagttcaagaaaggagac
aaacctgccgagaaagataaagaccaggcgaaggaggagccaaaaatcaagctcctgaga
aaaccagaccggggagatgacgtggatgtggaaaaacctaaagagaagtcaaagaaacct
gagaaggacaagatgaaagatgacagagctccagggggtcctgatatgaagaagcgccaa
aaccacgaaaccagggaggataggggatcacggaaagctgatgaagacggacacaaagac
ttcagagagcgagacgtagaaagaaacagggaccgtgaacgagaccgggaacggcggcag
aaagagaaggagcgcatcagacgacaggacgaggatcgacgaaggagaagggaacggcat
gacggagagaactcgtacagaaagccagatgaggaagggaaaatggagaaaggagatcgt
gtctgggaaaggagaaagggcgagaatgcaggggactctgtaagccataccgataagcct
aaaaagtctgaagaaaccctgagggatgagaaagctaaaagagatcgtttacgaaacaag
gatcggcctgccattcagctttaccagccaggtgccaggaaccgaggagctcgaggaggt
ggtggaggagaatctcatgctggagagagaaagtcagagggcgagaccaagagatcccaa
gagaagggagatgaatga
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