Coregonus clupeaformis (lake whitefish): 121540391
Help
Entry
121540391 CDS
T08357
Name
(RefSeq) retinoic acid receptor RXR-gamma-B isoform X1
KO
K08526
retinoid X receptor gamma
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320
PPAR signaling pathway
cclu04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
121540391
03320 PPAR signaling pathway
121540391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121540391
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121540391
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
121540391
Nuclear receptors [BR:
cclu03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
121540391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
121540391
NCBI-ProteinID:
XP_041705165
LinkDB
All DBs
Position
26:complement(12527500..12584691)
Genome browser
AA seq
447 aa
AA seq
DB search
MDQGGEFIQTDDSPWPMSTPHSHDPPMGGLVGHPSVISTSRPLPSPMRTLRSPMNGLAIH
GSLPCTPGINFGSLHSPQMREMNSMNSVSISEDIKPPTGLQNLGNINYNCTSPGGMSKHI
CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLSYMCRDSKDCLIDKRQRNRCQYCRYQK
CLAMGMKREGVSVQEERQRGKEQGEKEVESTSSFNEEMTVNKILDAELAVEPKTETYADE
SPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDNQVILLRAGWNELLIASFSH
RSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMEMDKTELGCLRAIVL
FNPDAKGLSNPPEVDGLREKVYASLESYTKAKYPDQPGRFAKLLLRLPALRSIGLKCLEH
LFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggatcagggaggggaatttattcagacagacgactccccctggccaatgagtacgccc
cactcccacgaccctccaatgggcggcttggtgggacacccctccgtcatcagcacctcc
aggcccctcccatcccccatgagaactttgcgctcgcccatgaatggcctggccattcat
ggctcgctgccctgcacaccaggaattaacttcggatctctccacagtccacagatgaga
gagatgaacagcatgaacagtgtcagtatttcagaggacatcaagcctcctacaggtctc
caaaatctggggaacatcaactacaattgcaccagccctggaggcatgtccaaacacatc
tgtgccatttgtggagaccgatcctcagggaagcactatggtgtgtacagttgtgaaggc
tgcaaaggcttctttaagagaaccatccggaaagacctctcctatatgtgtcgagacagc
aaggattgcctgatagacaaacgacagcgcaaccgctgtcagtactgccgctaccagaag
tgcctagccatgggcatgaagagagaaggtgtgtcggtgcaggaggagaggcagcggggg
aaggagcagggggagaaggaggtggagtccaccagtagttttaatgaggagatgaccgtc
aataagattctggacgcagagcttgccgtggagcccaagacagagacatatgcagatgaa
agccccggcaactcgacgaacgacccggtcaccaacatctgccaggcagcagacaaacag
ctgttcaccctggtggagtgggcaaagaggatccctcacttctcagagctgcccttagac
aaccaggttattctactacgggcaggctggaatgagctactcatcgcgtccttctcacac
cgctctgtcacagtgaaagacggcatcctattggccacaggcctccacgtccacagaagc
agtgcccacagtgccggagtgggctccatctttgacagagtattgacagagttggtgtct
aaaatgaaagacatggagatggacaagacagagctgggctgccttcgagccatcgtcctc
ttcaatccagatgcaaaggggctatccaatccaccagaggtggacgggctcagggagaaa
gtctacgcctcgctggagtcctacaccaaagccaagtacccagaccagcccggcaggttt
gccaaactgttgctgcgtctccccgccctgcgctccataggcctgaagtgtctggagcac
ctgttcttcttcaagctgataggagacactcccatagacaccttcctcatggagatgctt
gaagcgccgcatcaaatcacatga
DBGET
integrated database retrieval system
