Coregonus clupeaformis (lake whitefish): 121540431
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Entry
121540431 CDS
T08357
Name
(RefSeq) pre-mRNA-splicing factor 38A-like
KO
K12849
pre-mRNA-splicing factor 38A
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121540431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121540431
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121540431
Complex C
U4/U6.U5 tri-SnRNP related factors
121540431
BRITE hierarchy
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
121540431
NCBI-ProteinID:
XP_041705232
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All DBs
Position
26:complement(18119766..18124573)
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AA seq
310 aa
AA seq
DB search
MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMALKFVGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDCYKYL
EPLYNDYRKIKSQNRNGEFELQHVDEFIDELLHAERMCDIILPRLQKRQVLEEAELLDTR
ISALEEDLDEVETSDEEDEEEEKTERVQTPEPHRRSYRDNDRPRHSPSPRYRRSSRSPRR
RSRSPKRRSPSPRRERHRSKSPRRHRSRSRERRHRSKSPGHHRSHRHRSHSKSPERSSKK
SHKKSRRGNL
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataggacggttaaagatgccaacagtatacatggaacaaatccacaatacttg
gtggagaaaattattcgtactcgaatctatgaatcaaaatactggaaagaagaatgcttt
ggactgaccgccgagcttgtcgttgacaaagccatggcgctgaagtttgtcggtggagtt
tatggcggaaatatcaaaccgacacctttcctgtgtctcactctgaagatgctgcagatc
cagccagagaaagacatcatcgtagaattcataaaaaacgaggatttcaagtatgtccgc
ttgcttggagccatgtacatgaggttgactgggacatcagtggattgctacaaatacctg
gaaccactgtacaacgactacagaaaaatcaagagtcagaaccgaaatggggagtttgag
ctgcaacacgttgatgagtttattgatgaactactacacgctgagagaatgtgtgacata
atccttcccaggcttcagaaaagacaggttcttgaggaggcagagctgttagacacacgc
atcagtgccctggaagaggacctggatgaggtggagaccagcgatgaggaagatgaggaa
gaggagaagacagagagagttcagaccccagagcctcacagacggagttaccgagacaac
gatcggcctcgccactcgccctctccacgctacagacgcagcagtcgttcacccagacgg
aggagcagatcacctaagagacgaagcccatcccccagacgagaacgccaccgcagcaaa
agcccccgtcgccaccgcagccgctctcgggagagacgtcaccgctcaaagtccccaggg
catcacagaagccacaggcatcgcagtcactccaaatccccagagaggagttcaaaaaag
agccacaagaagagtcgaagaggaaacttgtga
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