Coregonus clupeaformis (lake whitefish): 121540560
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Entry
121540560 CDS
T08357
Symbol
cdhr5b
Name
(RefSeq) cadherin-related family member 5 isoform X1
KO
K16505
cadherin-related family member 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121540560 (cdhr5b)
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Cadherin related
121540560 (cdhr5b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Stevor
DUF6039
Motif
Other DBs
NCBI-GeneID:
121540560
NCBI-ProteinID:
XP_041705461
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All DBs
Position
26:39464133..39477748
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AA seq
754 aa
AA seq
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MEQKYPHFTLRTVLSFLLVFLLHRSTQQICSVPGNIFTITENNDVGAFVTTITTEVGVIL
TITSNPADSFGLSGNNLIVVKVMDYETTTSFTVDLQCRKGDQVLPLPIVVLIENVNDNPP
VFTESQYTLNVNELSPVGTSVGAFVAVDADDHQLYYRLMPDTAGFRLQDNSPNILVQQVL
DYDTVKMVTLTLFAQDTPTPTPPSFTATATIHVNILDIDNRPPWFQPCTETTVGLSKICL
SSGYTGKVNLTEQEVGALPLQPGPVRAIDGDKGLNVPIMYSFLTENGIFDINQNTGEITM
LKAADVAGPLTLTVLALQTSNSDQFATTTVTIVVVTKSVNPPRFEKTEYEGFISADAGID
SMVLESKASNRPLRVQAKDKDFADGFNPDVRYEVQESRGFSITPQGFILMAQNLEPGHVS
LHLRAIDSFNAESTTATLTVEIMPGITTMAPTTTDMATTDMATTDMATTDMATTEMATTE
MATTEMVTTEMATTEMATTEMATATPATINSTTEGILGAPGGYGPGDMAALGASMAVLLV
ISMVFIGLLVFRIQKGKTDWRKLSEASIFRSSLGKGPGELKDGVQYTNEGFQNDGDTSSV
GSKGPEEMDGKWAIGNGVTSRAVEETVIKVSAPMYPNLLPDTSSLAGSDKADSEKEVKPI
LTKERRMEEGYKSVWFKEDIDPNAKEEVVIIPDNGEREGDDDDDDDEEEEVSREEEEEYD
NSSPQTPKVFFSDADLDDGRGARFEDEKIQTSDL
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaaatatccacacttcactttgaggaccgtgttgagctttctgcttgtgttt
ttgcttcacagatcaactcaacagatatgctccgtgcctgggaatattttcactattaca
gagaacaatgatgttggtgcttttgtgaccacaatcaccacagaagttggagtgatccta
actattaccagtaatcctgcagactctttcggtctgagtggcaacaatcttatagtggta
aaagttatggactatgagactaccacgtctttcaccgttgaccttcaatgcagaaaaggt
gaccaagttctccctttaccaatagtggtacttattgagaatgtgaatgacaacccgcca
gtatttacagaaagccagtacactctcaatgtcaatgagttgtcacctgtaggcacaagt
gtcggtgcatttgtagcagtagacgcagatgatcatcaactctattaccgcctaatgcca
gatacagcgggttttagactgcaagataacagcccaaatatactagtgcaacaagttctc
gactacgacacagtgaaaatggtgacacttacattatttgctcaggataccccaacaccc
acaccaccttcatttactgccacagccactatccatgtcaacatcttggacattgacaac
cgtccaccatggttccagccctgcacagaaaccacagttggcttgtccaaaatctgcctc
agctcaggttatacaggaaaagtcaacctaacagagcaagaggttggtgcattgccattg
cagccaggtccggtgcgtgccattgatggtgacaaaggcttaaatgtgccgataatgtac
agttttctaactgagaatggcatatttgatatcaatcaaaacactggggagatcaccatg
ttgaaagcggcggatgtagcgggtccattgaccttaacagttttggctttacagacgtcc
aacagcgaccagttcgcgaccacaacggtcacgatcgttgttgtgaccaagagtgtgaac
ccgccgcggtttgagaagacggagtacgagggcttcatctctgcagacgcgggcatagac
agcatggttctggagagcaaagcctccaacaggccactcagggtccaggccaaggacaaa
gactttgctgatggcttcaaccctgatgtgagatacgaggttcaggaaagccgtggtttc
tctattaccccgcaaggcttcatcctcatggctcaaaaccttgagccaggccatgtttcc
ttgcatttgcgtgccatcgactcattcaatgcagaatcaactacagcaactctcacggtg
gagatcatgccagggattacaaccatggccccaaccaccactgacatggccaccactgac
atggccaccactgacatggctaccactgacatggccactactgaaatggccaccactgaa
atggccactactgaaatggtcaccactgaaatggccaccactgaaatggctaccactgaa
atggctactgccacccctgccaccatcaactccacaacagaggggattcttggggcccca
ggtgggtatggtcctggggacatggctgccctgggtgctagcatggctgtgttactggtc
atctctatggtcttcatcggcctgctcgtcttccgcatccagaagggcaagacagattgg
aggaagctgtcagaggccagcatcttccgtagctctcttgggaaaggtcccggcgagctc
aaggacggggtgcagtacaccaatgagggcttccagaatgacggggacaccagcagcgtg
ggctccaaaggcccagaggagatggatgggaagtgggccatcgggaatggagtgacctcc
agagctgtggaggagactgtcataaaggtctcggctccaatgtaccccaacctcctgcct
gataccagcagcctggcagggtctgacaaggccgacagcgagaaggaggtgaagcccatc
ctgaccaaggagaggcgcatggaggagggctacaagtcagtctggttcaaagaggacatc
gacccaaacgccaaggaggaagtggtcatcatacccgacaatggggagcgggaaggtgac
gacgatgatgatgatgatgaggaagaggaggtgtctagagaggaggaagaagaatatgac
aactcgtcaccacagaccccaaaggtgttcttctctgatgctgatctggatgatggacga
ggggcgaggtttgaggatgaaaaaatccagacgtctgacctgtga
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