Coregonus clupeaformis (lake whitefish): 121540575
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Entry
121540575 CDS
T08357
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X1
KO
K04861
voltage-dependent calcium channel alpha-2/delta-4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04260
Cardiac muscle contraction
cclu04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121540575
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
121540575
04261 Adrenergic signaling in cardiomyocytes
121540575
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121540575
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121540575
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA_3
dCache_1
VWA
VWA_2
CobT_C
dCache_2
Zn_ribbon_5
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
121540575
NCBI-ProteinID:
XP_041705484
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Position
26:39799909..39873025
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AA seq
1148 aa
AA seq
DB search
MSSSGDTVDPGRMGLRPRARSGGETNRLGHRGTPTRLRLRPRGTPTGLRLGLWILCFSWF
CFTAHAQMKIPPETVQFWANILSVQLRETTTRYSGANILQKKLKDVESIIKIVDIDGRDQ
VRDFAEDMERMLGSKMKSVKRLAESAEDADLYHDFNKTLQFDYYNSMLVNTADEDGNFVE
LGGEFPLEENEHFNNLPVNTMQSDVQVPTNVYNKDAYILNGIYWSEALNDVFMNNFQKDP
TLTWQYFGSSSGFFRIYPGIKWTPDSNGVAAFDCRNRNWYIQAATSPKDIIIVVDISGSM
KGLKMTIAKHTINTILDTLGENDFVNVIAYTDYVRYVEPCFKGTLVQADLDNREHFKVLV
AELHVKGEGKVAKAMKESFKILNEAATKGQGSLCNQAIMLITDGAMEDFKDVFEEFNWPD
RRVRLFTYLIGREMTFADNTKWIACNNKGYYTHISTLADVQENVMEYLHVLSRPMVINHN
HDIIWTEAYMDTVLPNTKELFATKAQSLLLMTSVAMPVFSKKKETLSHGILLGVVGSDIP
LLEVMKLAPRYRLGPHGYAFLITNNGYILAHPDLRPLYKDGKTLKPKPNYNSVDLAEVEW
EDIDETLRTAMVKGEMGTLSLNVRASVDKAKRPLFLTNDYFYITINDTPFSFGMVLTRGH
GQLMFMGTVSVEEGLHDLTSPDLSLSNEWTYCETDIDPHHRKYSQLQAVIRYLQGKEPDL
ECDEVLLQQTLFDAVVTAPLESYWQAIMLNASGMEAGVETAFLGTRSGLIRLTRYTGMET
RVAKTFLTPADKDNLFTVDHFPLWYRLAMENPPGRFLYYIPVEDKDNRDKTGASKYVIAI
TAVTVSSGGKTAMAGAIGVQMSLEMLEKRLWTIAFQPADTDCTEVEGVCPLSCQSTDVNC
FLVDSNGFIIVSKERSEVGRFFGEVDGSVMAALIKSGMYKKVSLYDYQGMCRSGHSHSSS
ARPLLSPFYGLAAVIKWFFSHMLMFLLEFNFCGLWHSDYVVDAKAGYHTSHKAKRMDALQ
PCDTEYLGFMLDNSIKETNSLLKCGRCQKMFVVQAVPDSNLVLMVVQADCDCSRQYSSIT
LEPKEVKYNASVKCNRMKSQKVRRRPKSCHAYHPKENAKDCGGASEISLSKALFLASLAT
SLALRRWT
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctcaggcgacacagtggacccgggcaggatgggactacgacccagggccaga
tcaggtggagaaacaaacaggctgggacacagagggacccccacaaggctgaggctcaga
cccagagggacccccacagggctgaggctgggcctgtggatcctgtgtttcagctggttc
tgcttcactgctcacgctcagatgaagataccgcctgagacggtccagttttgggctaat
atcctttcagtgcaactacgcgagactaccacaagatactcgggagctaacattctacaa
aagaaactcaaagatgtggagtccattattaagatagtggacatcgatgggagagaccaa
gtgagggactttgcagaggacatggagagaatgctggggtccaagatgaagtcagttaag
aggttggctgagtctgcggaggatgcagatttgtaccacgacttcaacaaaactctacag
tttgactactataactccatgctggtgaacacagcggatgaagatggtaacttcgtagag
ctgggtggggagtttcctctggaggagaatgagcatttcaacaacctgccagtcaacaca
atgcagagtgacgtacaggttccaaccaacgtctacaacaaagatgcctacatcctcaat
ggaatctactggtcggaggctctgaatgacgtgttcatgaacaacttccagaaagacccc
accctcacctggcagtattttggcagctcctcaggattcttcagaatctaccctggtatc
aaatggactccagattcgaatggtgtggctgcgtttgactgcaggaaccgtaactggtat
atccaggctgccacctcaccaaaggacattattatcgtggtggacatcagcggcagtatg
aagggtctgaagatgaccatcgccaagcacaccatcaacaccatcctggacacactgggg
gagaacgactttgtcaatgtcatcgcttacactgactacgtgcgctacgtagagccatgc
ttcaaaggcaccctggtgcaggctgacttggacaaccgcgagcattttaaggtgctagtg
gctgagcttcatgtgaaaggagagggaaaagttgcaaaggccatgaaagaatccttcaaa
atcctgaacgaggctgcgaccaagggccagggcagcctgtgtaaccaggccatcatgctg
atcacagatggagccatggaggacttcaaagacgtgtttgaagagttcaactggcctgat
cgcagggtgcgcctcttcacttaccttataggcagagagatgaccttcgcggacaacacc
aagtggatcgcctgcaacaacaagggttattacacacacatctccactctggctgacgtg
caggagaatgtcatggagtaccttcatgtcctgagccgaccaatggtcatcaatcacaat
catgacatcatctggaccgaggcttacatggacactgtgctacccaatacgaaggagctc
ttcgccacaaaggctcaaagtttacttctcatgaccagcgtggcaatgcctgtcttcagc
aaaaagaaagagacgctgagccatgggatcctgctgggggtggtcggttctgacatcccc
ctgctggaggtaatgaagctggctcccagatataggctgggtccccatggttacgccttc
ctcatcaccaacaatgggtacatcctggcacaccctgacctacgtcctctgtataaagac
ggtaagacgctgaagcccaagcccaactacaacagtgtggacctggctgaggtggagtgg
gaggacatagatgagacactaaggacagccatggtgaaaggggagatgggcactctgtct
ttaaacgtgagagcatcagtggacaaagcaaaaaggcctttgttcttaacaaatgactat
ttctacataaccatcaacgacaccccattcagttttggtatggtgctgacaaggggtcac
ggacagctgatgttcatggggacagtctctgtggaagagggcctgcatgacctgacgtcc
cctgatctatccctatccaatgagtggacgtactgtgagacagacattgacccacaccac
cgcaaatactctcagcttcaggctgtcattcgctacctgcaggggaaggagcctgatctg
gagtgtgatgaggtgttgctgcagcagaccctgtttgatgccgtagtgacagccccctta
gaatcctactggcaggccatcatgctcaatgcatctgggatggaggcgggtgtggagaca
gcgttcctgggaactcgctctggcctcatccggctcaccagatacactggcatggagacc
agggttgccaagacgttcctgactccagctgataaggacaacctgtttaccgtggaccat
ttccccctgtggtaccgcctggccatggagaacccccctggacgcttcctctactacatc
cctgtggaggacaaagacaacagagacaagacaggggcgtcaaagtatgtcatagccatc
acagctgtgactgtgtcatcaggaggcaagacagccatggctggagccattggggtgcag
atgtccttggagatgctggagaagaggctatggaccattgcctttcagcccgctgacaca
gattgtactgaagtggaaggtgtctgccctctcagctgtcagagcactgatgtgaactgt
ttccttgtggacagcaacggcttcatcatagtctctaaagagaggtcagaggtcggacgt
ttctttggggaagtggacgggtctgtgatggcagcgttgatcaagtcgggcatgtacaag
aaggtgtcgctgtatgactaccagggaatgtgcagatcaggacacagtcattctagtagt
gctcgccctctgctcagtcctttctacggccttgctgcagtgattaaatggttcttctct
cacatgttgatgttcttactggagttcaacttctgtgggctgtggcactcggattacgtt
gtagacgccaaggctggctaccatacatcccataaagccaagaggatggacgcattgcag
ccgtgtgacacagagtaccttggcttcatgttagacaactctatcaaagagaccaacagc
ctcctcaaatgtggacgctgtcagaagatgtttgtggtgcaggcggtccctgacagtaac
ctggtgttgatggtggtccaggcggactgtgactgctcccgccagtactcctccatcacc
ctggagcccaaggaggtcaaatacaacgcatcagtcaagtgtaacaggatgaaatctcag
aaagtcaggcggcgcccaaagtcctgccatgcctaccatcctaaggaaaatgccaaggac
tgtggaggagcttcagagatcagcctatccaaggccctcttcttggcttctctggccacc
tcattggccctgcgcagatggacttaa
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