Coregonus clupeaformis (lake whitefish): 121540580
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Entry
121540580 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121540580
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121540580
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121540580
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
zf-C3HC4
zf-RING_UBOX
Beta-prop_THOC3
WD40_CDC20-Fz
WDR55
Beta-prop_WDR5
zf-RING_5
Beta-prop_EML_2
zf-rbx1
zf-C3HC4_3
zf-C3HC4_2
EIF3I
Beta-prop_WDR3_1st
zf-RING_11
WD40
Beta-prop_WDR3_2nd
CFAP43_N
zf-RING_Vps41
Beta-prop_WDR75_1st
zf-C3HC4_4
zf-ANAPC11
WD40_2
Rtf2
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML
Beta-prop_RIG_2nd
Zn_ribbon_TiaS
Beta-prop_WDR36-Utp21_1st
Beta-prop_ACSF4
Beta-prop_WDR36-Utp21_2nd
NBCH_WD40
DUF6779
zf-UDP
Motif
Other DBs
NCBI-GeneID:
121540580
NCBI-ProteinID:
XP_041705497
LinkDB
All DBs
Position
26:complement(40037414..40057577)
Genome browser
AA seq
713 aa
AA seq
DB search
MEAMEVDLQLGGPSREPEPDAMAGQVDLPIIIPDSGSETEVEDEADAAPLDPPRLPTTWA
FSQNRVRVEGQVGPRIRMEGHIGPRVTTAAALRQRRARPGVRELYPTQTSASRFLDFLLR
VPTANQAEPDSGNTTEVSESEDEAEPVDSHNPGELAFPSSPRLNPPVAAMPLQGLNPSDS
NATTEAARTESGNQVNPESVTAPVATSGAALRSSQGDEGDGETCSICFEPWTTSGEHRLA
TLRCGHLFGYTCIDRWVKGQGQGAKCPQCNKKAKRSDIVLLYARKLRALDNTEQENMKRS
LEQEQSMRRRAELESAQCRLQLQVMTDECGKLRKQIQELKMLMAQTGCGPSKNSGASLSG
LSQRQDSTQGGHYVFSKAVLVSQAGGCRVLAYCEPLSCLLASHPSPHTTLVPGYGVKKVS
TVNLKACQYVPIHAKQIRGLAFNRQADSLLLSAALDNTIKLTSLMTNTVVQTYNTGKPVW
SCCWCLDNNNYVYAGLSNGSVLVYDTRDTSTHIQELQPLRTRCPVASLSYVPRASSSSFP
CGGLISGSLEGGCFWEQVDGTTYRPHILPLETGGCTDIQVEPESRHCLVTYRPGRSNPSL
RCVLMELNRTFQQDTAQEPSCSCYPVQTFSAGSSCKVLTKNAVFRSPAGEGSTLVCAGDE
STNSTMVWDAGSGSLIQKLPADLPVLDICPFEVNQGSYLASLTEKMLKIYKWE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgatggaggtggacttgcagctggggggccccagtagggaaccagaaccagat
gctatggcaggccaggtagatctccctatcatcattcctgactctggcagcgaaactgag
gtagaggacgaggcagacgcggctccccttgacccaccacggctcccgaccacctgggcg
ttcagtcagaacagagtcagagtggagggtcaagttgggcccaggatcagaatggagggt
catattgggcccagggtcactacagcagcagccctgaggcagcggagagccaggccaggc
gtcagggagctgtaccccacccagacctctgctagccgcttcctagatttcctgctgcga
gtccctacagccaaccaggccgagcctgactctggcaataccacagaggtgagcgagtca
gaggatgaggcagagccagtagactctcacaaccctggcgaacttgcctttccctccagc
cctcgtctgaaccctcccgttgcagccatgccactgcaaggcctaaatccttcagattct
aatgcaaccacagaggctgcgaggacagagtctggaaatcaagtgaatcctgagagtgtt
acagccccagtggccaccagtggtgcagctcttcggtcgtcccaaggggatgagggggac
ggggagacctgctctatctgctttgagccctggaccacgtcaggggagcaccgcctggcc
accctgcgctgcggacatctcttcggctacacctgcatcgaccgctgggtgaagggccag
ggccagggagccaagtgtccccagtgcaacaagaaggccaagcgctctgatatcgtcctc
ctgtacgcacgcaagctgagggctttggacaacacagagcaggagaatatgaagaggtca
ttggagcaggagcagtcaatgcggaggagggctgaactagagtcagcccagtgccgacta
caactgcaggtgatgacagatgaatgtgggaaactacgcaagcagatacaggagctgaag
atgctgatggcccagactggctgtgggccctctaagaactcaggggcctctctctccggg
ctctcacagagacaggacagcacccagggcggccactacgtcttctccaaggccgtgctg
gtgtctcaggcggggggctgcagggtgctggcctactgtgaaccactcagctgcctgctg
gcctcccatccctccccacacaccaccctggtgcccggctacggggtgaagaaggtgagt
acggtgaatctgaaggcatgccagtacgttcccatccatgccaaacagatcagaggcctg
gcgttcaacagacaagctgacagcctcctactctctgctgccctggacaacaccatcaaa
ctcaccagtctaatgaccaacacagtggtgcagacgtacaacacgggtaaaccagtgtgg
agctgctgctggtgcctggacaacaacaactacgtgtacgctggtctcagtaacggctct
gtgctggtgtatgacaccagagacaccagcacacacatccaggagctgcagccactacgc
actaggtgtcccgtggcctctctgtcctacgtgcctcgcgcctcctccagctcgttcccg
tgcggcggcctcatctcaggctctctggaggggggctgcttctgggagcaggtggacggc
accacttacagaccccacattttacccctggagacaggaggctgtacagacatccaggtg
gagccagagagcagacactgtctggtcacctacagaccagggcgctccaacccgtctctg
cgttgtgttctgatggagctgaacaggactttccagcaggatacggcccaggagccctcg
tgttcctgctaccctgtccagaccttcagcgccggctcctcctgcaaagtgctcaccaag
aacgctgtgttcagaagcccggccggggagggctccacactggtctgtgccggggacgag
tccaccaactccaccatggtgtgggatgcagggagtggatccctgattcagaagttgcct
gctgacctcccagtgttggacatctgcccatttgaggtgaatcagggcagttacctggcc
tctctcactgagaagatgctcaaaatctacaagtgggaatga
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