Coregonus clupeaformis (lake whitefish): 121540592
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Entry
121540592 CDS
T08357
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121540592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121540592
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121540592
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121540592
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121540592
NCBI-ProteinID:
XP_041705514
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Position
26:complement(27748124..27754754)
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AA seq
571 aa
AA seq
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MFSATRKKFVEGVESDYPDENMYYSQPSMYPHRSDKDVSALSARSHIPATAPFELESFPL
SLCGLSLVLLQMLSSPSPSSSGQLSQLGASLYGPQSALGFSIRGMGNNTPQLNRSLTQGT
PLPSHITPTTGVPTMSLHTPPSPSRGILPMNSRNLLNHSQVGQGIGMGSGRTNSMGSPNR
SPPSIICMPKQQPARQPFTINSMSGFGMNRNQAFGMNNSLSSNIFNGTVFNLPLTDGSEN
VTGLDLSDFPALADRSRREGSGNPTPLLNPLAGRAPYEASSLHLMTSSVGMVTKPSNEPT
QDFSIHNEDFPALPGPNYKDPTLSNDDSKTNLNSTGKSTSSGDGPKFPGDKTSSAQNNSQ
KKGIQVLPDGRVTNIPGGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNS
PENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMN
GGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGTYYFFDCLNWRKVA
KVKEFHLEYEKLEERPHVPSTFNYNPAQQAF
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgctacgagaaagaagtttgtagaaggggtggaaagcgactaccctgatgag
aacatgtactacagccagccgtccatgtacccacatcggtcggacaaagacgtaagtgct
ctgtctgctcgatcgcacatccctgctacagctccctttgaacttgaatctttccctctc
tctttatgtggtttatctctcgttctcctccagatgctctcgtctccctcaccgtcgtca
tcaggtcaactgtcccagcttggggccagtttatatggcccacagagtgcactaggcttc
tcaataaggggcatgggcaacaacacgcctcagttaaaccgcagcttaacgcaaggcact
ccgctaccgagccatatcacccccaccactggggtacccaccatgtccctccatacccca
ccctcgccaagcagggggatcctgccgatgaactcgaggaacctgctgaatcactcccag
gtgggccagggcatcgggatgggcagtggcaggaccaacagcatgggcagccccaaccgc
agcccccccagcatcatctgtatgcccaaacagcagcctgcacggcagcccttcaccatc
aacagcatgtcgggatttgggatgaaccggaaccaggcgtttgggatgaacaactcgtta
tcaagcaacatcttcaatggcacagtctttaacctacccctcacagacggcagtgaaaac
gtgacggggctagacctgtctgacttccctgcgttagcagacaggagtcggagggaagga
agcggaaacccaacgccgctacttaacccactagctggaagggccccctatgaagcctct
tctcttcatctcatgacctcatcagttggcatggtgacgaagccatcgaacgagccgacg
caggatttctccatccacaacgaggacttccctgcactgcctggtcccaactacaaggac
cccacgttgagcaacgacgacagcaaaactaacctaaactctacaggcaagagcacgtcc
agtggagacgggcctaagttccccggagacaagacgagctcagcacagaacaacagccag
aagaaagggatccaggtgttacctgacgggcgggtgacgaacattcccgggggaatggtg
acggaccagtttgggatgattggcttgctgacgtttatccgagcagcggagacggatccg
ggcatggtgcatttggcactggggagtgacctcacaacgctgggactcaacctcaactct
ccagaaaacctgtaccccaagtttgcttccccctgggcatcggcaccgtgtcgacctcaa
gacattgacttccacgtcccgtctgagtacttaaccaacatccacataagggacaagctg
gcagctattaaactggcgcggtacggtgaagacctgctgttctatctgtactacatgaac
ggaggagacctgctacagctcctggcagcggtagagctgtttaaccgggactggcggtac
cacaaggaggagcgggtgtggatcacgcgggcgccgggcatggagcccacactaaagacc
aacacctacgagagggggacctactacttctttgattgtcttaactggaggaaggtagcc
aaggtaaaggagttccacctggagtacgaaaagctagaagagaggccccacgtcccgtct
accttcaactacaacccagctcagcaggcattctga
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