Coregonus clupeaformis (lake whitefish): 121540690
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Entry
121540690 CDS
T08357
Symbol
fan1
Name
(RefSeq) fanconi-associated nuclease 1
KO
K15363
fanconi-associated nuclease 1 [EC:3.1.21.-
3.1.4.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
121540690 (fan1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121540690 (fan1)
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.1 phosphodiesterase I
121540690 (fan1)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
Other FA pathway factors
121540690 (fan1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAN1_TPR
VRR_NUC
Fan1_SAP
FAN1_HTH
MFS_3
F-112
DUF4363
Motif
Other DBs
NCBI-GeneID:
121540690
NCBI-ProteinID:
XP_041705658
LinkDB
All DBs
Position
26:35043240..35069727
Genome browser
AA seq
1088 aa
AA seq
DB search
MAEKGSKPKHQRTLSVTKRKGSIGSKDGKKSVTASPGTASILSFFNNTPPPRLACPLCGQ
LVPRFRINQHIDSQCQNFQREDGASIDTASASNIVTTIKLASSHSPPRKASKVHNPDTGP
SSPKEEKPQREANTNTSPYFKKHGASSPSQQVTTREMSSKTVVRTIDLGSRLSSKLSRRG
LKQSLMSPEDLQSQVDDIITIQNSPEKDRRSEELSSSQKENHLPRGLGDQTTCLMATETT
NVTVESHSTISLGRPQIESREEPLEHLESKSDSKSESLSPVVSLAPPPLSSAPSKLNKRK
KVEKAEVSVKTRRMSTRSKKGRYEKSDDGEPDEDLTRNKLLTSTTTADDDDDDDDRQHRT
EESSAGNCDTLLKSSSEVPEEECERSTRERKGKLDEEGEQQQQQQQESTVTGSSDQLTEP
DTDRRTDKEDSESPRLPYYLCNFLTVLEAVLENEDDRMLFNQEDLSAIHSFEHLSVTGQK
LYVRLFQRKLKWLQVNKLNYNEISTDLGPVAQELVEGGFLQTDKDLQELGEVLDLLPAPE
LRSLAKTFHLGGPGSGTQKHQLVEGLLKLSRQRSLFALAPGQNNTGTVILKRAKQLAGSC
VRLHRGPRAVFSRVLLLFSLTDGLEEEEMAGGGQGQLYTILLVNSGRLAFPDYTVQRRAK
LFLDREDLIRYEAAMRALQEVITAMQAGRWEDALALYTAAKTTWQEMSKTYDLSHQEGLP
VFLRCFTTGWAYTRILSRGVEVLQRLHCYKEAVKELRSLLGQSVYCPDSRGRWWDRLALN
LQQHLKLPEQAIRSIRDGLSDPLVRTGHQLSLHQRANRMKESPSYKKYRPLLSDLPTIHV
NDVTHVTIRGQLFPHEGGTGKNVFLMPAEEEGGGEGGYSTVMCSVEELSLAHYRRQGFDQ
GIHGEGSTFSTLFGLLLWDVIFMDGIPDVFRNPYQPCPLDLFTDCFYGNRREAIETRVQV
LCEASNETLHNLMAEAWTNQEGRVCSLVNWERFSSLQRAQSLVSCLGGSFLGGMFTRMAK
DYRHCRAGLPDLVVWNTTSNTYKLVEVKGPSDRLSQKQQIWLDELQRLGADVEVCHVTAT
GARAAWLE
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaggaagcaaacccaaacatcagagaacgctctcagtaacaaagagaaaa
ggatccatcggtagtaaagatggtaagaagagtgtcactgcaagtcctggtacagcctcc
attttatcgttcttcaacaacaccccgccacctagactggcatgtcctctgtgtggtcag
ctggtgccacggttcaggataaaccaacacattgactcacagtgtcagaactttcagagg
gaagatggtgcgtccattgatactgcttcagccagtaacattgttactacaataaagctg
gcatcgtctcactctcctcccaggaaggccagtaaggtccataatccagacacagggcct
tcttctccgaaggaggaaaaacctcagcgagaggccaacaccaacaccagcccatacttt
aaaaagcatggtgcttcttctccttctcagcaggtaaccaccagagagatgagcagtaag
actgtagtcaggaccattgacctaggtagcaggctgtcctctaagctctccaggaggggc
ctgaagcaaagcctgatgtcccctgaggacctacagtcgcaggttgatgacatcatcacc
atccagaattccccagagaaagacagaaggtctgaggaactgagcagctctcagaaggag
aaccacctccctcggggattaggtgaccagacaacatgcttaatggccacagagacaaca
aatgtcacagtggaaagtcacagtacaatatcactgggaagacctcagatagaaagcaga
gaagaacctttagaacatttagaatccaaatctgattctaaatcagaatccttgtctcca
gtagtttctctggccccgccacctctgtcctctgctccatccaaactgaacaagaggaag
aaagtagaaaaagcagaggtctctgttaaaacacggaggatgtctactcgcagcaagaaa
ggcagatatgagaagagcgacgatggagaacctgatgaggacctcactagaaacaaactc
cttacgtcaacaacaacagctgatgatgatgatgatgatgatgatcggcaacacagaaca
gaagaatcttcagctggtaactgtgacactcttttgaagagcagctcagaggtgcctgag
gaggagtgtgagagaagcaccagagaaagaaaaggaaaattagatgaagagggagaacaa
caacaacaacaacaacaagaatccacagtgaccggtagcagtgatcagctgacagagcct
gacacagacagaagaactgataaggaagattccgagtcaccacggttaccgtactacctg
tgtaacttcctgaccgtgctagaggcagtgctggagaatgaagatgataggatgctgttc
aatcaagaagacctctcagccatacacagctttgagcatctgtcagtgacaggtcagaag
ctgtacgtgagactgttccagaggaaactgaagtggctccaggtcaacaagctgaactat
aatgagattagcactgacctgggacctgtagctcaggagctggtggaaggaggcttccta
cagacagacaaggacctccaggagctgggggaggtgctggacctgctgcctgccccggag
ctccgtagcctggctaagaccttccacctggggggccctgggtctggcacccagaaacat
cagctggtggagggactcctgaagctgagcagacagaggtctctgttcgccctggcccca
ggacagaacaacactgggactgtcatactaaagagggcgaagcagctagctggttcctgt
gtacgtctgcatcgcggccccagggccgtgttctctcgggttctcctcctcttctccctg
acagacgggctggaggaggaggagatggccggagggggtcagggtcagctctacaccatc
ctactggtcaactctggccgactggctttccctgactacaccgtacagcgcagagccaaa
ctgttcctggatagagaagatcttatcaggtatgaggcggcgatgcgagcgctgcaagag
gtgatcacagccatgcaggcaggccgctgggaggacgctctggcgctttacactgcagcc
aagacgacctggcaggagatgagcaagacttacgacctcagccaccaggaggggctgcca
gtgttcctgcgctgtttcaccacagggtgggcctacacacgcatcctgtccaggggagta
gaagtactacagagactacattgctacaaggaagcggtgaaggagctgcgctccctattg
ggccagtcagtctactgtccagacagcagggggcgatggtgggacagactggcactcaac
ctccagcagcacctcaaactacccgaacaggctatccgctccatcagagacggtctctct
gaccccttggtgaggacgggccaccagctgtcactccaccaaagagccaataggatgaag
gaatcccccagctacaagaagtaccgccccctgctcagtgacctgcccaccatccacgtc
aacgatgtcactcatgtcacgatccgggggcagctcttcccccatgagggggggacaggg
aagaatgtgttcctcatgcctgctgaggaggagggggggggagaggggggatactccact
gtcatgtgttctgtggaagagctgtcactggcacactaccgtcgccaaggctttgaccaa
gggatccatggagagggctccacgttttccactctgtttggtcttctgttatgggacgtc
attttcatggacggtattccagacgtcttccgaaatccctaccagccctgcccactggac
ctcttcacagactgtttctatgggaaccggagggaggcgatagagacgcgtgtgcaggtg
ctctgtgaggcgtccaatgagacgctgcacaacctgatggccgaggcctggaccaatcag
gaggggagggtgtgttcactggtcaactgggagcgcttctcatctctgcagcgggcacag
agtctcgtgtcgtgtctgggtggatcgtttctgggagggatgttcaccaggatggccaag
gactacagacactgccgagcaggactgcccgacctggtggtgtggaacacaaccagcaac
acctacaagctggtggaggtgaagggcccaagcgacaggctgtctcagaagcagcagatc
tggttggatgagctacagagactgggggctgatgtagaggtctgtcacgtcactgccacc
ggggccagagcagcgtggctggaatag
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