Coregonus clupeaformis (lake whitefish): 121540753
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Entry
121540753 CDS
T08357
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
cclu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121540753 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
121540753 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121540753 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121540753 (gtf2h1)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121540753 (gtf2h1)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121540753 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
121540753
NCBI-ProteinID:
XP_041705756
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All DBs
Position
26:complement(31296522..31315198)
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AA seq
550 aa
AA seq
DB search
MAALSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESTNFHFSNESTALKDRDAAKDLLQQLLPKFKKRANKELEEKNRMLQE
DPALFQLYKDLVVCQVISAEEFWANRLSVNNVDHSLSNNKQEVGISAAFLADIRPQTDGC
NGLRYNLTSDIIESIFRTYPAVKQKYGENVPHNMTEKEFWTRFFQSHYFHRDRINTGLQD
IFSECAKQDEKGLKSMVVQGVKNPMVDLLSLEDKSLDEGYGSNATAPSTSNTNKTVKENS
NSAIIKRFNHHSTMVLAAGSGKKADAPNDQACETSSTDGNSRDSDFFQPPIKKVKIQDVV
EYEDLHKENGRKTVALNLKKSDRYSHGPVPLLPQQYTTSQDIINSVNCIKHEIASYKPCL
TQVMSSSTASCAIAALSPGGILMQALAQQAINQMVPSDVQGELKHLYTAAGELLRHFWSC
FPVNTPFLEEKVVKMRANLERFQMTKLRPFQEKIQRQYLSTNLTGHLEDMFQMAYNKFHA
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttgtcggaggaagtgctgctggtggtgaagagggtccgacagaggaagcag
gatgggacactctacctgatggcagagaggatagcctggggaccagaggggaaagaccgt
ttcacagtcagccacctgtatgctgacatacgctgtcagaagatcagcccagacggcaag
gccaagattcagctgcagttggtcctccacacgggggagagcaccaacttccacttctcc
aacgagagcactgccctgaaggaccgcgatgcagccaaggacctcctccagcagctgctg
cccaagttcaagaagcgggccaacaaggaactggaggagaagaacagaatgttacaggaa
gatccggctctgtttcagctttacaaggatctggtggtgtgtcaggtgatcagcgctgag
gagttctgggccaatcggctgagcgtaaacaacgtggaccactccctctccaacaacaag
caggaagtgggcatctcggcagccttcctggcggacatccggccccagacagatggctgt
aacggcctgagatacaaccttacctctgacattatcgagtcaatcttcaggacgtaccct
gcagtgaaacagaagtacggcgagaacgttcctcataacatgacagagaaggagttctgg
acgcggttcttccagtcccactacttccaccgagaccgcatcaacacgggccttcaggac
atcttctccgagtgtgccaagcaggacgagaagggactgaagtccatggtggtccaagga
gtgaagaacccaatggtggacctgctgtcactggaggacaagtcgttagatgagggttat
gggtctaatgccacagcaccgtctacgtccaacactaacaagaccgtgaaggagaacagt
aactccgccatcatcaagcggttcaaccaccacagtaccatggtgctggcagcaggttcc
ggaaagaaggcggatgctcctaacgatcaggcctgtgagactagcagtactgatggaaac
tctagggactcagacttcttccaaccacctattaagaaggtgaaaatacaagacgtcgta
gagtacgaggaccttcacaaggagaacgggaggaagacagtcgctctgaacctcaagaag
tctgacaggtactctcatggtcctgtgcctctcctgccccaacagtacaccaccagtcaa
gacatcatcaactctgtcaactgtataaagcatgaaatagccagctacaagccctgcctt
actcaggtgatgtccagcagtacagccagttgtgccatcgctgccctctccccagggggt
attctcatgcaggcgttagcacagcaagccattaaccagatggtgcccagtgacgtccag
ggggagctgaagcatctgtacacggctgctggggagctgctgagacacttctggtcctgt
tttcctgtcaacacacccttcctggaagagaaggtggtgaagatgagggccaacctggag
agattccagatgaccaagctccgccccttccaggagaagatccagcgtcaatacttgagt
actaaccttactggtcacctggaggacatgtttcagatggcctacaataaattccacgcc
tggcaaacacgtcggatgatgaggaaaacctga
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