KEGG   Coregonus clupeaformis (lake whitefish): 121540797
Entry
121540797         CDS       T08357                                 
Symbol
thbs2a
Name
(RefSeq) thrombospondin-2 isoform X1
  KO
K04659  thrombospondin 2/3/4/5
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04145  Phagosome
cclu04510  Focal adhesion
cclu04512  ECM-receptor interaction
cclu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121540797 (thbs2a)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    121540797 (thbs2a)
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121540797 (thbs2a)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121540797 (thbs2a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cclu04131]
    121540797 (thbs2a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121540797 (thbs2a)
   00536 Glycosaminoglycan binding proteins [BR:cclu00536]
    121540797 (thbs2a)
Membrane trafficking [BR:cclu04131]
 Endocytosis
  Phagocytosis
   Opsonins
    121540797 (thbs2a)
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   121540797 (thbs2a)
  Exosomal proteins of colorectal cancer cells
   121540797 (thbs2a)
  Exosomal proteins of bladder cancer cells
   121540797 (thbs2a)
Glycosaminoglycan binding proteins [BR:cclu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121540797 (thbs2a)
SSDB
Motif
Pfam: TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_CCN TSP1_ADAMTS cEGF Laminin_G_3 Laminin_G_2
Other DBs
NCBI-GeneID: 121540797
NCBI-ProteinID: XP_041705828
LinkDB
Position
31:34566151..34598170
AA seq 1191 aa
MILRRSLNLLPILLLCSSALPQDGEVTMDDDTTFDLFDISGITRKTLGAKQFRGQDTDNP
AYRFIRFDHLPSVSAPVLKQMLQQIQNNEGFVFVASMRQDRGSRGTLIALEGTNGQRQFE
IVSNGRANTLDLVYWVDGSQNVVSFEDVDLSDSQWKNITLHVHGENANLFVGCSLIDSFI
LDEPFYEHLQAEESRMFVAKGSIRENHFRGLLQNVRFMFDTSVDDVLRNKGCEVTKPDEA
NVVVSESTDMVDVSPATAITTNFIGQKTEKLGADMCERSCEELSTMFQELKGLRVVVGNL
IDGLQKVTEENTVMKDALGKMKNSKEKHMCWQDGRLFEDKEDWVVDSCTTCTCQDSKIVC
HQITCPPVACASPSFIDGECCPVCLSKDSEDGWSPWSEWTECTVTCGTGTQQRGRSCDAT
SNTCSGPSIQTRKCSLGKCDSRVRQDGGWSLWSPWSSCSVTCGEGQITRIRHCNAPTPQL
GGKDCEGQGRETQRCEAKPCPIDGGWGPWSPWAICSATCGGGVKGRTRVCNSPEPQYGGK
KCPGETNDSNACNKQDCPIDGCLSNPCFGGVDCNSAPDGSWECGLCPLGFRGNGTHCEDV
NECDMVSDVCFKAGGALRCVNTDPGFHCLACPPRYKGTQPFGMGVEAAKKNKQVCEPENP
CKDKTHNCHRSSECIYLSHFSDPMYKCECRIGYAGDGFICGEDSDLDGWPNQNLVCGANA
TYHCRKDNCPNLPNSGQEDFDKDGQGDACDQDDDNDGIMDERDNCPLMYNPRQFDFDKDD
VGDRCDNCPYEHNPAQIDTDHNGEGDACAVDIDGDEILNEQDNCPYVYNNDQKDTDMDGV
GDQCDNCPLLHNPDQADTDNDLVGDQCDNNQDIDEDGHQNNLDNCPYVANSNQADHDKDG
KGDACDFDDDNDGIPDDRDNCRLTPNKDQLDSDGDGRGDACKDDFDNDNIPDILDVCPEN
NAVSVTNFRKFQMVHLDPKGTTQIDPNWVVRHQGKELVQTVNSDPGIAVGFDEFNAVDFS
GTFYVNTDRDDDYAGFVFGYQSSGRFYVVMWKQITQTYWEDKPSKAFGISGVSLKVVNST
TGTGENLRNALWHTGNTKNQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGK
QILADSGPVYDKTFAGGRLGLFVFSQELVFFSDLKYECRDKLEFPTVLSIR
NT seq 3576 nt   +upstreamnt  +downstreamnt
atgatactcaggagaagtctcaacttgctgcccattttattactttgctcctcagcacta
cctcaagatggcgaggttactatggatgacgacacaacgtttgacctgtttgatattagc
ggtatcacacgcaagactctgggcgccaagcaattccgtggtcaagacacggacaacccc
gcttaccgcttcatccgcttcgaccatttgccctctgtgagcgcgcccgtgctcaaacag
atgcttcagcaaatccagaacaatgagggcttcgtgttcgtggccagcatgcgccaggac
cgtggctcgcggggaaccctcatcgccttggaaggcaccaacggccaacggcagtttgaa
attgtctccaacggtcgcgccaacacgctggaccttgtctactgggtggacggctctcaa
aatgttgtctccttcgaggatgttgacctgtctgactcgcagtggaagaatatcacactt
catgttcatggcgaaaatgcaaatctgtttgtgggctgcagtctcatcgacagcttcatc
ttggacgagccattctacgagcacctgcaggcagaggagagccgaatgttcgtcgccaag
ggatccatccgcgaaaaccactttagggggttactgcagaatgttcgcttcatgttcgac
acatccgtggatgatgttctcaggaataaaggctgtgaagtcactaagccagacgaggcc
aacgtggtggtgagtgagagcacagatatggtagatgtgagtcccgccacagccatcacc
actaacttcatcggccagaagacagagaagctgggagcagatatgtgtgaacgatcctgt
gaggaactcagcaccatgtttcaggagctcaaaggactgcgtgtagtagtggggaacctc
attgacggcctgcagaaagtgacagaggagaacacagtaatgaaggatgctttggggaag
atgaagaactccaaggagaaacacatgtgctggcaggacggacggctgtttgaagataag
gaggactgggtggtggacagctgcaccacgtgtacctgccaggactcaaagatcgtgtgt
caccaaattacttgtcctcctgtggcctgtgctagcccctccttcatcgacggagagtgt
tgccccgtgtgtctatctaaggacagtgaggatggctggtccccctggtcggaatggaca
gagtgtactgtcacctgtgggacaggtactcaacagagaggacgctcatgtgatgccacc
agtaacacctgctccggaccatccatccagaccaggaaatgcagcctgggaaaatgtgac
agccgagttcgtcaggacggtgggtggagcctgtggtctccgtggtcatcatgctcggtg
acgtgtggtgagggccagatcaccaggatacgccactgcaatgcccccacaccacaactg
gggggcaaggactgtgagggccaggggagagagacacagcgctgtgaggccaagccctgt
ccaattgacggtggttggggaccgtggtcgccatgggcgatctgctcggcaacttgtggg
ggtggagttaagggtcggacccgtgtctgtaacagccccgaaccccagtacggaggcaag
aagtgccccggggagaccaacgacagtaatgcctgcaacaaacaagactgccctatcgac
ggttgtctgtctaacccatgcttcggaggagtggactgtaacagcgcccccgacggatcc
tgggagtgtgggctatgccctctcggtttccgtggcaacggaacccactgcgaagatgtc
aacgagtgtgacatggtatctgacgtatgctttaaagctggtggagcattgcgttgcgtc
aacacagacccagggtttcactgtctggcctgcccaccccgctacaagggaacgcagccc
ttcggcatgggggtggaggctgccaagaagaacaaacaggtctgcgagccagagaacccc
tgcaaagacaagacccacaactgtcaccggtcctcagagtgtatctacctcagccacttt
agtgaccccatgtacaagtgtgagtgcaggatcggctacgctggtgatggcttcatctgt
ggagaggactcagacctggatggatggcctaatcagaacctggtgtgtggcgccaacgcc
acctatcactgcagaaaggataactgccccaacctgcctaactctggacaggaagatttt
gacaaagacggccagggagacgcttgtgaccaggatgatgacaacgatggaatcatggat
gaaagagacaactgtcctctaatgtacaaccccagacagtttgactttgataaggatgat
gtgggggatcgttgtgacaactgcccctacgaacacaaccctgcccagatcgacaccgac
cacaacggggaaggagatgcctgtgctgtcgacattgatggagatgaaatcctaaacgag
caagacaactgcccgtacgtgtacaacaatgaccagaaggacactgacatggatggagtt
ggtgaccagtgtgacaactgtcctctgctacacaaccctgaccaggctgacacagacaat
gaccttgtaggagaccagtgtgacaacaaccaagacattgatgaagacggtcaccagaat
aacctggacaactgtccttacgtcgccaactccaaccaggcagaccacgataaggatggc
aagggggacgcctgtgacttcgacgatgacaatgacggtatccctgacgatagggacaac
tgtagattgacacccaacaaagatcaactggactctgatggcgacggtagaggcgacgcc
tgcaaagacgactttgacaacgacaacatcccggacatccttgatgtgtgtcctgagaac
aacgccgtcagcgtcacaaacttccggaagtttcagatggtgcacctggaccccaaggga
acaacgcagatcgaccccaactgggtggttagacatcagggcaaggagctggtacagacc
gtcaactctgaccctggcattgctgttggctttgatgagttcaacgcggtggacttcagt
ggtaccttctacgtgaacacggaccgggatgacgactacgcaggctttgtgttcggctac
cagtctagcggccgcttctacgtggtgatgtggaagcagatcactcagacctactgggaa
gataaaccctccaaggccttcggtatctctggtgtctcccttaaggtggtcaactcaacc
acaggcacaggggagaacctgagaaacgccctgtggcacacaggcaacacaaaaaatcag
gtgcgcactctgtggcacgacccaaagaacattggctggaaggattacacagcctacagg
tggcacctcatccacagacccaagactggattcatcagggttgtggtttatgaaggaaaa
cagatcttggcagactcaggaccagtgtacgacaagacgtttgctggaggacggttaggc
ctgtttgtcttctcccaggaactggtcttcttctccgatctcaaatatgagtgtagagat
aagctggagtttccaactgtgttgtccatcagataa

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