| Entry |
|
|---|
| Name |
(RefSeq) protocadherin-1 isoform X1
|
|---|
| KO |
|
|---|
| Organism |
cclu Coregonus clupeaformis (lake whitefish)
|
|---|
| Pathway |
| cclu03273 | Virion - Lassa virus and SFTS virus |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:cclu00001]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
121541301
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:cclu01009]
121541301
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:cclu04515]
121541301
Protein phosphatases and associated proteins [BR:cclu01009]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121541301
Cell adhesion molecules [BR:cclu04515]
Cadherins
Protocadherins
121541301
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
3:complement(21155311..21510048)
|
|---|
| AA seq |
1217 aa
MLCQSSRVMALRWDATLVLAAMLLVCCGAAPTDILYRMLEEQPPNTLIGSLASDEGLPDS
GHLYKLEVGTPYLRVDGKTGDIYTTEVPIDRETLRDCRNLFEGDKCFLEFEVSITDLKQG
QGPRLIEGRIEVQDVNDNTPQFTSPILMLSIPENTHIGALFSIPMASDKDSGHNGVAEYS
LSAGIDADQLFSLQVAEDTDEKQPQLIVMGNLDREQKDSYDLNIRVVDGGTPPRASSALL
RVTVTDQNDNAPKFERSHYEAELAENSPMGHSVLQVKANDADMGTNGEIDYSLHQASDAV
QRLLRIDRSTGIIYVKGLVDREEESFLKFFVVAKDRSPNSKSSKVLVTINVKDQNDNAPA
IEIRGIGLVTHHDGVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPAS
ESANDRKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDMNDNAPVF
SPTLFEVDFAEENQPGDKVLDVVATDADSGSNAELTYSIIMDSTTKGLFEIDPKTGEVRV
MNTLDREHREHYEFHVAAADKGSPSLRGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMP
PLSPVGMVTVIDADKGENARVRLSVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLK
AVDAGDPPRSSYVGVTINVLDENDNSPYVTKPSNSSYKYLPPLTTPETRVEVVEAEDIDT
GPNAELVFSITGGNPYGLFHISPNNGEITLAQEFTRKHNGLHRLVVKVSDKGKPQRHTTA
LVHIFVNETMGNITLIESLVGHSLYTPLDRDIAGDPNYALAQRSNILYGSLAGIAGVILV
IVVVVVIRHRMQKDTKSGYQAGKKESKDLYAPKAGPKNGKGKKSKKGKAPKPAKPLEEEE
EASLQKGLNFNLINDSVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASK
KHQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSNKQLPHRRVTFSTANQAQD
LQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLR
PLPDVAMTGNCTHECTEFGHSDACWMPGQPSPNRKSSTKNTPKLSTFVPYLESEGQDHLM
ANGSPKPLAEERGSGGGGSGGGGSKMANIRFLPPYSSAFSGGIDSGKGCEEIPLSQAAEY
HSATTPTSQGSKREIYL |
|---|
| NT seq |
3654 nt +upstreamnt +downstreamnt
atgctgtgccagtcgagcagagtgatggcgctgaggtgggatgccacgctggtgttggcc
gccatgcttctggtttgctgtggcgccgctcccactgacattctctaccggatgctcgag
gagcagccgcccaacacgttgatcggcagcctggcatcggatgagggcctgcccgactcg
ggccacctgtacaagctggaggtgggcaccccttacctgcgcgtggacggcaagactgga
gacatctacaccacagaggtccccatcgaccgtgagacactgcgggactgccgtaacctg
tttgagggcgacaagtgcttcctggagttcgaggtgtccatcacggacctgaagcagggc
cagggaccgcggctgatcgagggccgcatcgaggtgcaggacgtcaacgacaacacaccc
cagttcacctcacccatcctcatgctgtccatcccagagaacacgcacatcggggcactc
ttctccatccccatggccagcgacaaggactcgggccacaacggcgtggccgagtactcg
cttagtgccgggatcgacgccgaccagctcttcagcctgcaggtggccgaggacacagac
gagaagcagccgcagctcatcgttatgggcaacctggaccgcgagcagaaagactcgtat
gatctcaacatccgtgtggtggacgggggcacaccgccgcgcgccagcagcgccctgctg
agggtgaccgtcaccgaccagaacgacaatgcacccaagttcgagaggagccactatgag
gctgagctggccgagaacagccctatgggacattcagtcctgcaggtgaaagccaacgat
gctgacatgggtaccaacggggagatcgactacagcctgcaccaggcctccgatgccgtc
cagaggttgctgcgcatcgaccgctccacagggatcatctacgtcaaggggctggtggac
cgtgaggaggagagcttcctcaagttctttgtggtggccaaggaccgcagccccaactcc
aagagctccaaagtcctggtgaccatcaacgtcaaggaccagaatgacaatgcacccgcc
atcgagatccgtggcattggcctggtcacccaccacgacggtgtggccaacatctcagag
gacatgcccatcggcacgcccgtggccctggtgcaggtgtcggaccgtgatgaaggggag
aacgccgtggtcacctgcgtggtggccggggacgtacccttccagctgcggcccgccagc
gagtcagccaacgaccgcaagaggaaatacttcctgcagaccacgaccctgctagactac
gagcgcatcaaggactacaggattgaaatagtagcagtggactcaggtaaccctgcactg
tccagcaccaactccctgaaggtgcaagtcaccgacatgaatgacaatgcgccggtcttt
tcccccaccctgttcgaggtggactttgcagaggagaaccagccaggtgataaggtgctg
gatgtggtggccacggacgcggacagtggctccaacgcagagctgacctacagcatcatc
atggactcgaccactaaggggctctttgagatcgaccccaaaacgggagaggtgcgcgtg
atgaacacgctggaccgtgagcacagagagcactacgagttccatgtggcggcagccgat
aagggctcgcctagcctgagggggacggccacggtggtggtcaaggtgctggaccgtaac
gacaacgaccccaagttcatgttgagcggctacagcttctccgtcttggagaacatgcct
ccgctcagccctgtcggcatggtgacggtcatcgacgcagataagggcgagaacgccagg
gtgcggctctcggtggagcccgacaatggcaagtttgtcatccagaacggcacaggcact
atcctctccagcatctcctttgatcgcgagaaggagagcacatacactttccgcctcaag
gctgtggacgccggtgaccctcccaggtcctcctacgtgggtgtgaccatcaacgtcttg
gacgagaacgataactccccctatgtcaccaagccctctaactcctcctacaagtacctc
ccacctctcacgaccccagagacacgcgtggaagtggtggaggccgaagacattgacacg
ggacccaacgccgagctggtcttcagcatcaccggcgggaacccctacggactgttccac
atctcacccaacaatggggagatcaccctggcccaggagttcacccgcaagcacaacggg
ctccaccgtttggtggtgaaggtgagcgacaaaggcaagccacaacgtcacaccaccgcc
ctggtccacatcttcgtcaacgagaccatgggcaacatcaccctgatcgagtctctggtg
ggtcacagcctctacactcctctggacagagacattgccggggaccccaactacgcgctg
gcccagcgcagcaacatcctgtacggcagcctagcgggcatcgccggagtcatcctggtc
attgtggtggtggtggtgatccgccatcgcatgcagaaggacaccaagagcggctaccag
gcaggcaagaaggagagcaaggacctgtacgcccctaaagcagggccgaagaacggcaag
ggcaaaaagagcaagaagggcaaggcgcccaagcccgccaagccactggaggaggaagaa
gaggcaagcctccagaagggcctcaacttcaacctcataaacgatagtgtcaatgacagt
ccccggatccacctgcccctcaactaccccccgggcagccccgacctgggcagacactac
cgctccaactcccccctgccctccatccagctgcagccccagtcgccctctgcctccaag
aagcaccaagccgttcaggacctgcccgccaccaacacctttgtgggcacgggtgacaac
aactctacaggctccgatcaatattcggattacagctacaaggcaaacccgccaaaatac
agcaacaaacagctcccccatcgccgagtgaccttctccacggccaatcaggctcaagac
ctgcaggacccctcccagcacagctactatgacagcggattggaggagtcggagaccccc
agctccaaatcgtcatcagggccccgcattgggcccctggccctgcctgaggaccactac
gagaggaccaccccggacggcagtatcggagagatggagcacccggagaacgatctcagg
cctctgcccgatgtggccatgactgggaactgcacccatgagtgtaccgagttcggccac
tccgacgcctgctggatgcctggccagccctcccccaatcgtaagagctccaccaagaac
acccccaagctctccaccttcgtgccttacctggagagtgaggggcaggaccacctcatg
gccaacggcagccccaagcccctggcagaagagcgtgggagtggtggaggtggcagcggc
ggtggaggctccaagatggctaacatccgcttcctgcccccttacagcagtgccttctcc
gggggcatcgactccggcaaaggctgcgaggagatccccctgagccaggcagccgagtac
cactctgccaccacacccaccagccagggatccaagagagagatttacctgtga |
|---|
