Coregonus clupeaformis (lake whitefish): 121541372
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Entry
121541372 CDS
T08357
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121541372
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
121541372
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
THSD1_N
THSD1_D3
THSD1_D2
TSP_1
TSP1_spondin
TSP1_ADAMTS
TSP1_CCN
TSP1_CFP_C
Motif
Other DBs
NCBI-GeneID:
121541372
NCBI-ProteinID:
XP_045063888
LinkDB
All DBs
Position
27:43206428..43258372
Genome browser
AA seq
1011 aa
AA seq
DB search
MPQGSTPTPLLSFLLATLGYAMAGLHLWPSVHVALSNSSVFVNYNATDRNASSDFRNMTL
SLVDTETNATLLTRSLPANQSEGRLEFNCSCFLYAGTFRFHLEQIDYATANSNANGNASA
SITDGDGDVTTTATWWWSSELQVEWPTFHIAVDRASNQSGSFQVGISTNELFQSCSSGVG
SALFLEVSYLEFNQIGRNSIDKVRARTRHPIKALHSQKVDLSCAFHFTERDFIRVALRSP
HTNQDVKSSGPLYLSRIFSYKLLVDNVNSYRSGCEGVVSVRLVTPPCALIYGKVLLFRDG
GVGSEGKGDAGVEGGGGAEGSTPSAPLAFNWLTQGENETEFNCSVFDPGRNKYCFRFVLN
FSRSLSPAQTCLVVHRNAESWGAWQAWSVCSVSCGEGVRERVRKCLLPSGGGSMQCTGMV
KEQSLCSLEDCTASSSLGGGNLVAVAGISLCLAVILATLLVTLWRKLCRTPHCSSVRRGS
MHSPGGRKLSDEASICGHSLQRPSLSDNQGGTGPGLTQNERPNLGCKPLPQPPPLVIPLV
QDPDRLSPSGQKVLPPIFGYRLAQQQLKEMKKRGLKEATQLYHVSQSPVHDTLLEDSPTS
ASTPTQPGFTLPGLSPNPGPLDPQGEDSNLSRFCITAPFPEPRVPQRSSATLPDRLSPRV
ELVLGPPVAGYLREGGGGGSSRRIDRTADWVEMVERTGLGGMGGGRGVPSNSYQRNPNFR
RTSSFHDTKPPPPPAAACRPHRERSQTQVGPRTRTLPEGSCRARGTLANQIQNTTYPHYP
IPEQSTPDWARPKPQPPGPGDDRRRPWVETGSPPCFSNKPKHAENNNTYLTSDPKHTKTN
TTTAAMLGSELLSNPELTLERERRRSGDRGGGEDGGERGGTSGIGGPGLGPGVGSRGCPA
YLTPDRAERAEQNWSRRGPSPIQRNILARKLREAQSCNTASGQRGRHNQQQQRQRSSTFS
VSASEQRKGRCRSLPLSGDSPYGLTEAEQRMLDLDMTSLYLGEDEFSPVHT
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgccacagggttccacgccgacaccgctgctctccttcctattggccacgctgggatac
gcaatggctggcctccacctgtggccctccgtccatgttgcccttagcaacagcagtgtg
ttcgtcaactacaacgccacggaccgcaacgcttcctccgacttccggaacatgacccta
tctctggttgacacggaaaccaacgccaccctgctcaccagatccctgccagccaaccaa
tcagaggggagattagagttcaactgctcctgcttcctgtacgctggaacattccgcttc
cacctggagcagattgactacgcaaccgccaattctaatgctaatggtaatgctagtgct
agcataacggatggagatggggatgttactactactgccacctggtggtggagctctgaa
ctgcaggtggagtggccgacctttcacattgctgtggaccgggccagcaaccagtcagga
tccttccaggtggggatctcgaccaatgagctgttccagtcctgctcctctggcgttggc
tctgccctcttcctggaggtcagctacctggagttcaaccagattggtcgaaacagcatt
gacaaggtccgcgcccgcacccggcacccaatcaaagcgctgcattctcagaaggtggat
ctgtcgtgtgcattccatttcacagaacgagacttcatcagggtggcgctgcgctcccct
cacacaaaccaggatgtcaagtcatctggccctctctacctctctaggatcttctcctat
aaactactggtggacaacgtcaactcctacaggtcaggctgtgagggagtggtatctgtg
cgcctggtgacccctccctgtgctctgatctacggcaaggtcctcttattccgggacgga
ggtgtggggtcggagggaaagggggacgcaggggtggaggggggtggaggggcagagggc
tcgactccctccgctccactggcgtttaattggctgacacagggggagaacgagacagaa
ttcaactgttcagtgtttgacccaggaaggaataaatactgcttcagatttgtgctcaac
ttcagccgctctttgagtccagcacagacctgcctggtggtacacaggaatgcagagtcc
tggggtgcgtggcaggcgtggagtgtgtgcagtgtgagctgtggagagggggtgagggag
agagtgcgaaagtgtctgctgccctccggtggtggaagtatgcagtgcaccggcatggtc
aaggaacagtctctctgctcactggaagactgtacagcctcctcctctctcggtggtggt
aacctggtagccgtagccggtatatccctgtgtctggcagtcatcctagctaccctcctg
gtcaccctgtggcgtaaactctgccggacaccccactgtagctccgtccgccgcggatct
atgcactcacctgggggacgtaaactctctgacgaggcctccatctgtgggcacagtctc
cagagacccagcctctccgacaaccaggggggcacagggccggggctaacccagaacgaa
aggcctaacctggggtgcaagcctctgcctcagccccctcctctggttattcccctggtt
caggacccagatagactgtctccatcgggacagaaggtgctaccgcccatctttgggtac
cgtctggcccagcagcagttaaaagagatgaagaagagagggttaaaggaagccacccag
ctctatcatgtctcacagagccccgtccacgacactcttctggaggactctcccacctcc
gcctccacccctacccagccagggttcaccctccctgggctcagccccaaccccggcccc
ctggacccccagggagaggattctaatctgagccggttttgtatcaccgccccgttcccc
gagcccagggtcccacagcgcagctcggctactctgccagacagactgagccccagggtg
gagctcgtcctggggcctcccgtggccgggtacctgagagaaggtgggggtggagggagc
tccagacgaatagaccgcacggcagactgggtggagatggtggagaggactgggttagga
gggatgggaggaggaagaggcgttccctccaactcgtaccagagaaacccaaacttccga
cggacatccagctttcacgacaccaagcccccacctcccccagcagccgcatgtcgcccc
cacagggagaggagtcagacccaggtgggtccccgcaccaggaccctccccgagggcagc
tgtagggcccggggaaccttggcgaaccagatccagaacacgacctacccccactatccc
atcccagagcagagcacccccgactgggccaggcccaaaccgcaaccccctgggcctggg
gacgacaggagaagaccctgggtggagactggaagtcctccgtgtttcagtaacaaaccc
aaacacgctgaaaacaacaacacctacttgacctctgaccccaaacacacaaagaccaac
actacaacggcagccatgttaggatctgagctgcttagcaaccctgaactcaccctggag
agggagaggcggaggagtggtgatagaggaggaggtgaagatggaggagagagaggtggg
acttcaggtatagggggaccaggattaggaccaggggtggggtctcgtggctgccctgcc
tacctcaccccggaccgtgcggagcgggcagaacagaactggagccgtcgaggcccttcc
ccgattcagagaaatatcctggccaggaagctgagagaggctcagtcctgcaacaccgcc
tccggccagcgggggcgccataaccaacagcagcagaggcagcgcagctccacatttagc
gtgtctgccagtgagcaaaggaaggggaggtgtaggtctctgcctctgtctggagactcc
ccctatgggctgactgaggcagagcaacgcatgctggatctagatatgacctcactatac
ctgggagaggatgagttctcacctgtacacacctag
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