Coregonus clupeaformis (lake whitefish): 121541392
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Entry
121541392 CDS
T08357
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121541392
03036 Chromosome and associated proteins [BR:
cclu03036
]
121541392
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121541392
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
121541392
SLIK complex
121541392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
121541392
NCBI-ProteinID:
XP_041706300
LinkDB
All DBs
Position
27:complement(14604975..14730748)
Genome browser
AA seq
1820 aa
AA seq
DB search
MLASNVGMPTMIPRVASNPRNLDLLPDIPPPPILEMGQPRACNSDDESGPGSGSGSGSGS
SSSSSSSSNSDSSSGSSSDSGSQSDSDSEKSKEKNEPESKAKIDGAEFWKSNPSILAVQR
SAMLRKQQLQLQQQQSSSNSGSDSSSSDNSDDSSGGKRRKSGSGSSSRSGSGSVSGSGSD
SSAQEQARSEESDNYDPSHKVKSRKPPTKANTRNEKKSNVQRKKPSAGSSSDDGKKSSSN
QGPRRQATQNVSYKEDDDAKTDSDDLVEVCGEDVPPPDENEFETLERVMETRLGRRGATG
GTTTVYAVEADGDPNANFNVSKEAGDQQYLIKWKGWSHIHNTWETEETLKLQNVKGMKKL
DNFKKRELDKRKWIQCSSPEDVEYFNCQQELMDDLHSQYQLVERIIGHSNQKSAAGFPDY
LCKWQGLPYSECSWEDGALISRKYQKSIDDYMRRNQSKSIPSRDCKVLKQRPRFMPMKKQ
PSYIGGDGLELRDYQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHDHQLY
GPFLLVVPLSTLVSWQREIHLWAPLMNVVVYLGDISSRGMIRTHEWMHVQNKRLKLNILL
TTYEILLKDKGFLGNVPWAFIGVDEAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSL
KELWSLLHFIMPDKFHSWEIFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKV
EQILRVEMSAIQKQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPED
NEFNTKQEALQLLIRSSGKLVLLDKLLVRLRGRGHRVLIFSQMVRMLDILAEYLKSRQFL
FQRLDGSIKGEMRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVIIFDSDWNPQN
DLQAQARAHRIGQKRQVNIYRLVTKSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHT
GTAPSSATPFNKEELSAILKFGAEELFKEQEGEEQEPQDMDIDDILKRAETRENDPGPST
VGEELLSQFKVANFFMMEEEEIVMDSERHHRGWDDIIPEAQRWQMEEEERQKELEEIYLL
PRMRNCAKQISFNGNDSRRSRNRQYSGSHSDSASDRKRPKKRGRPRTIPRENIKGFSDTE
IRRFIKSYKKFGGPLERLDAIARDAELVDKSEYDLKRLAETVHNGCLKTLRENPCRPEKT
SGGRRGKVKGPTFRISGVQVNAKLVISHERELVPLHKAIPADPEERKRYTIPFPSKAAHF
GIDWGKEDDSSLLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYL
IKLLSKDLAKKEVQRQTGTANSRKRKLSKKNKAVKPAEVDEVVKSLSSEPPSEKSSEDEI
EEEKEVVPVKSPPRRGRAERMVVKEEEEKPEPEKVPSPPEEKREPKEREIKKEKEESREV
KEKELKEKKDTKHVEPVHKQEEVTGEKQPCEVKAEVRDKVKKASDTPVHITAGDENVPIS
EESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLK
EYSNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAADQNTSTVNTHGF
KHTDIERLKDNSHHEDSSRDRYSSERHHSSSRYHEHSGSKDRDNRDRHTSVDPYNRKWGS
GGESRKRPYLSFSNGKDHQVHYRSDRQDSRYYNDTKHRKVDEHRSGRDRRMDSKERFNSD
HHSHSEHRSYSEHKSSSRGDSYRYHSDWQIDHRASASGPRSPCDQRSSYDGRSPLGHRSP
FEYSSDHKSTPEQIWSSRKT
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atgttggcatccaacgtaggaatgccaacgatgatccctcgtgtagccagtaacccaagg
aatcttgaccttctccctgacattccaccaccacccatcctggagatgggtcagccgagg
gcttgtaactcagacgatgagtccgggcctgggtcaggctccggttcgggctcaggctcc
agttccagcagcagcagtagtagtaattcagacagtagctcaggaagcagctcggattct
ggcagccagtccgattccgactctgagaaatccaaggagaagaacgaaccggaaagcaaa
gccaagatcgacggggccgagttttggaagtccaacccaagtatcctagcagtgcaaagg
tccgctatgctcaggaaacagcaactccagctgcaacaacaacagagctcttctaacagc
ggatcggattcgtccagcagtgacaattcagatgactcatcaggtggaaagagaagaaaa
tcaggttctggatcgtcctccaggtctggatcagggtccgtgagtggttccggctctgac
tcgtcagcacaggaacaggcgcgcagcgaagagtccgacaattacgaccccagtcacaaa
gtcaaaagtagaaagcctccaaccaaggcaaacaccagaaacgagaagaagagcaacgtg
cagaggaaaaagccctcggcgggctcgtcatcggacgacggcaagaaatcgtcatcgaac
caggggcccaggcgccaggccacgcagaacgtcagctacaaggaggacgacgatgcgaag
acagactcagacgacctggtggaggtgtgcggggaggacgtacccccgccggatgagaat
gagtttgagaccctggagcgagtgatggagacgcggctagggaggagaggagcaacggga
ggcaccaccacagtgtacgcagtggaggcagacggagaccccaacgccaacttcaatgtc
agcaaggaggcgggtgaccagcagtacctgataaagtggaaaggctggtcccacatccac
aacacctgggagacggaggagacgctcaagctgcagaacgtcaagggcatgaagaaactg
gataacttcaagaagagggaattggacaagcggaaatggattcaatgttcttcaccagag
gatgtggagtacttcaactgtcaacaggagctcatggatgatttgcactcacaatatcag
ctggtggagaggataattgggcattcgaatcagaagtcggcggcaggtttcccggactac
ctgtgcaaatggcagggcctgccgtattctgagtgcagctgggaggacggagccctcatc
tccagaaagtaccagaaaagcatagatgactacatgcgcagaaaccagtccaagtccatt
ccctccagagattgcaaggtgttgaagcaaaggccgaggtttatgcccatgaagaaacag
ccatcctatatcggaggagatggactggagctcagagactaccagttggacagcttgaac
tggatggctcactcctggtgcaaggggaacagttgtatcttggctgacgagatgggcctg
ggcaagacaatccagaccatctcgttcctcaactacctgttccacgaccaccagctgtac
ggacccttcctgctggtggtgcccctgtccacgctagtctcctggcagagggagatccac
ctgtgggcccccctcatgaacgttgtggtctacctgggtgacatcagcagccggggcatg
atccgaacgcatgaatggatgcacgttcagaacaagagacttaagttaaacattctgctt
acaacatatgaaattctcctcaaagataagggattcctgggcaacgtgccgtgggccttc
atcggcgtggatgaggcccaccggctgaagaatgatgactcgctgctatacaagaccatg
atggacttcaagtccaaccacaggctcctcatcacgggcacaccgcttcagaactcgctc
aaagagctctggtccctgctgcacttcatcatgcctgacaagttccactcgtgggagata
tttgaggaggagcatgggaagggcagggactctggctacaccagtctacacaaggagctg
gagccctttctgctgcgtagagtcaagaaggatgtggagaagtctcttcctgctaaagtg
gagcagatcctccgagtggagatgagcgccatccagaaacaatactacaagtggatcctg
acgaggaactataaggccctgagcaaaggcaccaagggcagcacgtcgggcttcctcaac
atcatgatggagctgaagaagtgctgcaaccactgctaccttattaagccccccgaggac
aacgagttcaacaccaaacaagaggccttacagctcctgatccggagcagtgggaagctg
gtgttgctggacaagctgctggtgcgtctacgggggcggggccaccgcgtgcttatcttc
tcccagatggtccggatgctggacatcctggccgagtacctgaagagccgccagttcctg
ttccagagattggatggctccatcaagggagagatgaggaaacaggcgctggaccatttc
aacgctgagggctctgaggatttctgcttcctgttgtcgacgcgggcgggcggcctgggc
atcaacctggcatcggcagacacggtgatcatcttcgactcggactggaacccccagaat
gacctgcaggcccaggccagagcccacaggattggccagaagagacaggtgaacatctac
cgcctggtgaccaagagctcggtggaggaggagatcattgagcgggccaagaagaagatg
gtgctggaccacctggtcatccagaggatggacaccacgggaaagaccgtcctccacacc
ggcaccgctccctccagtgccactccgttcaacaaggaggaactgtcggccattttgaag
tttggtgctgaggagctcttcaaagagcaggagggggaggagcaggagcctcaggatatg
gacatcgatgatatcctgaagagagccgagaccagagagaatgaccccggcccctccact
gtgggagaggagcttctctcacaattcaaggtggccaactttttcatgatggaggaggag
gagatcgtcatggactctgagcgccaccatcggggctgggacgacatcatccccgaggcg
cagcggtggcagatggaggaggaggagaggcagaaggagctggaggagatctacctgctg
ccacgcatgaggaactgtgccaaacagatcagctttaacggcaatgatagccgacggagc
agaaacaggcagtactcaggctcccacagcgactccgcctcggatcgcaagaggcccaag
aaacgaggacgacctcggaccattccacgagaaaacatcaagggcttcagcgacactgag
atacgaagatttatcaagagctacaagaagtttggtggaccacttgaaagattggacgct
atcgcccgcgatgccgagctggtggataagtctgagtacgacctgaagcgcctggcggag
actgttcacaacggctgcctgaagaccctcagggagaacccctgcagaccagagaagaca
tcagggggcagaagagggaaagtgaaaggtcccacgttcaggatctcgggcgtccaggtg
aacgccaagctggtcatctcccacgagagggagctggtgccgctccacaaagccattcct
gccgaccctgaggagaggaagaggtacacgattccgtttccctccaaggcagcacacttt
ggcattgactggggcaaggaggacgactccagcctgctcataggaatctacgagtacggt
tacggcagctgggaaatgatcaagatggaccccgacctcaacctgacacacaagctcctg
ccagacgaccctgacaagaagccacaggccaagcaactgcagacgagagcggactacctc
atcaaattattgagcaaggacctggccaaaaaggaagtacagaggcaaacagggacagcc
aactcacggaaaaggaaactgagtaagaagaacaaagctgtgaagccagccgaagtggac
gaagtggtgaagagtctgtcctcggagcccccctcagagaagtcctcagaggacgagatt
gaggaggaaaaggaggtggtcccagtgaagtcgccgcccagaaggggccgagcggagcgc
atggtggtgaaggaggaggaggagaagcctgagccagagaaggtgccctcgccgcccgag
gagaaaagggagcccaaagaaagggagattaaaaaggagaaggaggagagccgggaggtg
aaagagaaggagcttaaagagaagaaggacaccaagcatgtggagccagtacataaacag
gaagaggtcacaggggagaagcagccgtgcgaggtgaaggctgaggtacgagataaggtg
aagaaggcctcagacactccagtccacatcacagcaggagacgagaacgtgcccatctca
gaagagtcggaggaactcgaccagaagaccttcagtgtgtgcaaggagaggatgcgaccg
gtcaaggcggccctgaagcagctggaccggccggagaagggcctatcggaacgcgagcag
ctggagcacacgcgccagtgcctcatcaagatcggagaccacatcactgagtgtctcaag
gagtactccaaccccgagcagataaaacagtggagaaaaaacctgtggatatttgtttca
aagttcacagaatttgatgcaagaaaattgcataaattgtataagcacgcaatcaagaaa
agacaagagaatgctcaggcagctgaccagaacactagcactgtaaatacccatggcttt
aaacacacagacatcgagaggctgaaggacaactctcaccacgaagacagcagcagggac
cgctacagctctgagcggcaccactcttcgtcacgctaccacgagcacagcggcagcaag
gaccgtgacaaccgggacaggcatacctccgtggacccctacaacaggaagtgggggagc
gggggagaatccaggaagagaccctacttgtccttcagcaacggcaaagaccaccaagtc
cactaccggtcagaccggcaggacagcagatactacaacgacactaagcacaggaaggtg
gacgagcaccggtcaggccgagacagacggatggacagcaaggagcgcttcaactcagac
caccactcgcattccgaacaccgctcatactcagagcacaagtcgtcatcacgaggcgac
tcctaccgctaccactcagactggcagatagaccaccgggcgtcggccagcgggccccgt
tcaccgtgcgaccagcgctcgtcctatgacggacgctcgcctctgggccaccgttcgcct
ttcgagtactcatcagaccacaagagcacgccggagcagatctggagcagccgaaagaca
taa
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