Coregonus clupeaformis (lake whitefish): 121541422
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Entry
121541422 CDS
T08357
Name
(RefSeq) spectrin alpha chain, non-erythrocytic 1 isoform X1
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04210
Apoptosis
cclu04517
IgSF CAM signaling
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121541422
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
121541422
09142 Cell motility
04820 Cytoskeleton in muscle cells
121541422
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121541422
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121541422
Intermediate filaments
Intermediate filament-binding proteins
121541422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
SH3_9
EF-hand_1
EF-hand_7
EF-hand_6
SH3_2
EF-hand_8
SH3_3
SH3_10
EF-hand_FSTL1
SCO1-SenC
Motif
Other DBs
NCBI-GeneID:
121541422
NCBI-ProteinID:
XP_041706347
LinkDB
All DBs
Position
27:complement(5020706..5079678)
Genome browser
AA seq
2509 aa
AA seq
DB search
MATMEIPDLGQQREATRLPRETMATTSPQRMDTSGVKVLESADDIQERRQQVLDRYRRFK
ELSGVRRQKLEDSYRFQFFRRDADELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEA
EVQANAGAIIKLDETGNLMISEGHFASETIRTRLEELHRLWDLLLQKTKEKGVRLLQAQK
LVQYLRECEDALDWISDKEAMATSEELGQDLEHVEVLQKKFEEFQTDLAAHEERVNEVNQ
LAGKLSQESHPEAELIVRKQEEVNAAWQRLKGLAQQRQGRLFGAAEVQRFNRDVDETISW
IKEKEQLMASDDFGRDLASVQALLRKHEGLERDLAALEDKVNTLGGEAERLQQTHPQNAS
QIHLKRDELITNWEQIRTLAAERHAHLNDSYRLQRYTADFRDLTSWVTEMKALINADELA
NDVAGAEALLDRHQEHKGEIDAHEDSFKATDEAGQALLNTGHYAAEEVKEKLGVLTEEKD
SLLELWEVRRQQYEQCMDLQLFYRDTEQVDNWMSKQEAFLLNEDLGDSLDSVEALLKKHE
DFEKSLSAQEEKITALDEFATKLIQNNHYAKEDVATRRDALLSRRNALHERAQSRRAALE
DSFHLQQFFRDSDELKSWINEKMKTATDEAYKDPSNLQGKVQKHQAFEAELSANQSRIDA
LQKSGQELLDGKHYAADEVSVRMDEVSSQWKKLLEATELKGIKLREANQQQQFNRNVEDI
ELWLYEVEGHLASDDYGKDLTSVQNLQKKHALLEADVAAHQDRIDGITIQARQFQEAGHF
DGDNIKRKQEALVARYDALRDPMAARKQKLSDSLRLQQLFRDVEDEETWIREKEPIAAST
NRGKDLIGVQNLLKKHQALQAEIAGHEPRIKAVTQKGEAMVEEGHFAGEEVKVKLGELNG
RWDTLKGKAGQRRQDLEDSLQAQQYFADANEAESWMREKEPIVASPDYGKDEDSAEALLK
KHEALMSDLSAYGSSIQALKEQAQSCRQQVAPTDDETGKELVLALYDYQEKSPREVTMKK
GDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPTQSSSRENLLDEQGSIGLRQDQIE
NQPVAKEACSVSVRMKQVEELYGTLLELGEKRKDMLEKSCKKFMLFREANELQQWINEKE
GALTNEEVGSDLEQVEVLQKKFDDFQKDLKANESRLRDINKVASELESEGLMVEEATMVQ
AQEQVMVGSTPGKDDADSKNASPWKNVRLAVQTTANFNTIKELNNRWRSLQQLAEERSNM
LGSAHEVQRFHRDADETKEWIEEKNQALNTDNYGHDLASVQALQRKHEGFERDLAALGDK
VNSLGETAERLIQCHPEAVDDIQEKCTELNTAWSSLVARADQRKDKLGNSHDLQRFLSDF
RDLMSWINGIRSLVSSEELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAR
GHYASPEIQQKLEALDRERADLEKAWVQRRMMLDQCLELQLFNRDCEQAENWMAAREAFL
ASDDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQSFADQLVGADHYAKPEIFKRRNE
VLDRWRRLKAQMIEKRSKLGESQTLQQFSRDVDEIEAWISEKLQTATDESYKDPTNIQLS
KLLSKHQKHQAFEAELHANADRIRGVIDTGNALIQRGACAGSEDAVQSRLGALDEQWQFL
VNKSAEKSQKLKEANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLL
EADISAHEDRLKDLNGQADSLTASTAFDPTQVKDKRDAVNGRFAKIKSMAAVRRAKLNES
HRLHQFFRDLDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELGAHEPAIQSV
QDTGKKLSDDNTIGQEEIEQRLGQFEEHWTELKDLAAARGQRLEESLEYQQFVANVEEEE
AWINEKLNLVGSEDYGDTLAAVQGLLKKHEAFETDFNVHRDRVNDVCSNGDELIKKNNHH
VDSISAKMTSLRGKVSELERAAAMRKAKLDENSAFLQFNWKADVVESWIGEKENSLKTDD
YGRDLSSVQTLLTKQETFDAGLQAFQQEGITNITALKDQLLAAKHVQSKAIEARHAALMK
RWNQLLDNSQARKKKLLEAQEHFRKVEDLFLTFAKKASAFNSWFENAEEDLTDPVRCNSL
EEIRALRDAHEAFRSSLSSAQADFNQLAELDRQIKSYQVVSNPYTWFTMEALEETWRNLQ
KIIKERELELQKEQRRQEENDKLRQEFAQHANAFHQWLQETRTYLLDGSCMVEESGTLES
QLEATKRKHQEIRAMRSQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQWDQLDQLGMR
MQHNLEQQIQARNTTGVTEDALKEFSMMFKHFDKEKSGRLNHQEFKSCLRSLGYDLPMVE
EGEPDPEFESILDTVDPNRDGNVSLQEYMAFMISRETENVKSSEEIESAFRALSVDAKPY
VTKEELYQNLSKEQADYCISHMKPYLDSKGREMTSAFDFVEFTRSLFVN
NT seq
7530 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggaaatcccagacctagggcaacagcgggaggcaacccgtctgcctagg
gagactatggccacaacctctcctcagagaatggataccagtggggtgaaagtgctggag
tctgccgatgacatccaggagcgccgtcagcaggtgttggaccgctaccggcgcttcaag
gagctgtcgggcgtgcgccggcagaagctggaggactcctaccgcttccagttcttccgc
cgcgatgccgacgagctggagaagtggatccaggagaagctgcagatcgcctctgacgag
aactacaaggaccccaccaacctccagggcaagctccagaaacaccaggccttcgaggcg
gaggtgcaggccaacgctggggccatcatcaagcttgacgagactggcaacctcatgatc
tccgagggccactttgcctccgaaaccatccgcactcgtctggaggagctgcaccgtctt
tgggacctgctgctgcagaagaccaaggagaaaggtgttcgtctactgcaggcccagaag
ctggtgcagtacctgcgcgagtgtgaggatgccctggactggattagtgacaaggaggcc
atggccacctcggaggagctgggccaggacttggagcatgtggaggtgctccagaagaag
tttgaggagttccagacggacctggcggctcacgaggagcgcgtgaacgaagtgaaccag
ctggcaggcaagctgagccaggagtctcaccccgaggcggagctcatcgtccgcaagcag
gaggaggtgaacgccgcgtggcagaggctcaagggcctggcgcagcagaggcagggcagg
ctgtttggagccgccgaggtgcagcgcttcaacagggatgtggacgagaccatcagctgg
atcaaggagaaggagcagctcatggcgtccgatgactttggccgggacctggccagcgtt
caggccctgctgcgcaagcacgagggcctggagagagacctggctgccctggaggacaag
gtcaacactctggggggagaggctgaacgtctgcagcagacccacccccagaacgcttcc
cagatccacctgaagagggacgagctcatcaccaactgggagcagatccgcacactggcc
gccgagcgccacgcccacctcaacgactcctacaggctgcagcgctacactgcagacttc
cgtgacctgaccagctgggtgacggagatgaaggccctgatcaacgctgacgagctggcc
aacgacgtagccggagccgaggctctcctcgaccgccaccaggagcacaagggtgagatt
gatgcccatgaggacagcttcaaagccacggacgaagccggtcaggccctgctcaacacc
ggacactacgccgcagaggaggtcaaggagaagcttggtgtcctgactgaggagaaggac
tctctgctggagctgtgggaggtgcgcaggcagcagtacgagcagtgcatggacctgcaa
ctcttctacagggacacagagcaggtcgacaactggatgagcaagcaagaggctttcctt
ctgaacgaggatcttggtgactctctggacagcgtggaggccttgctgaagaaacacgag
gactttgagaagtccctcagcgcccaggaggagaaaatcactgccctggatgaatttgcc
accaaactgatccagaacaaccactatgccaaggaggatgttgccactcgtagagatgcg
ctgctgagccgccgcaacgccctgcacgagcgtgcccagtcccgccgcgccgctctggag
gactccttccacctgcagcaattcttccgcgactcggacgaactcaagagctggatcaat
gagaagatgaagacggccaccgacgaagcctacaaggacccgtccaacctgcagggcaag
gtccagaagcaccaagccttcgaggcggagctgtcagccaaccagagccgcatcgacgct
ctgcagaagtctggccaggagctcctggacgggaagcactacgccgccgacgaggtgtct
gtacgcatggacgaggtcagctcccagtggaagaagctgctggaggccaccgagctcaaa
ggcatcaagctgcgcgaggccaaccagcagcagcagttcaacagaaacgtggaggacatt
gagctgtggttgtatgaggtggagggccacctggcttcagatgactacggcaaggaccta
accagtgtccagaacctgcagaagaagcacgccctgctggaggcggacgtggctgcccac
caggaccgcatcgacggcatcaccatccaggcgcgtcagttccaggaggcaggccacttt
gacggcgacaacatcaagcgcaagcaggaggcgctggtggcgcgctacgatgccctccgc
gaccctatggccgcccgcaagcagaagctgtcggactccctgcggctgcagcagctcttc
agggacgtggaggacgaggagacctggatccgggagaaggagcccatcgccgcctccacc
aaccggggaaaagacctgatcggcgtccagaacttgctgaagaagcaccaggccctgcag
gcggagatcgccggccacgagccccgcatcaaggccgtcacccagaaaggagaggctatg
gtagaggaaggacactttgctggggaggaggttaaggtgaagctgggggagctgaacggc
cgctgggacaccctgaaaggcaaggccgggcagcgcaggcaggacctggaggactcactg
caggcacagcagtactttgccgacgccaacgaggcagagtcctggatgagggagaaggag
cccatcgtggccagccccgactacggcaaggatgaggattcggctgaggccctgctgaag
aagcacgaagccctgatgtctgacctgagtgcttatggcagcagcatccaggctttgaag
gagcaggcccagtcctgcaggcaacaagttgcgcccaccgatgatgagactggcaaggag
ctggtgctggccctctatgactaccaggagaagagcccccgtgaggtcaccatgaagaag
ggagacatcctcaccctgctcaacagcaccaacaaggactggtggaaggtggaggtgaac
gaccgccagggctttgtgccagcggcctacgtcaagaagctagaccccacccagtcctcc
tccagggagaacctgctggacgagcagggcagcatcggcctccgccaggaccagatcgag
aaccagccggtcgcaaaggaggcttgcagtgtttctgtacgcatgaagcaggtggaggaa
ctgtacggcactctcctggagctgggcgagaagcgcaaggacatgctagaaaagagctgc
aagaagttcatgctgttccgagaggctaacgaactgcagcagtggatcaacgagaaggag
ggagccctcaccaacgaggaggtgggctccgacctggagcaggtggaggtgctgcagaag
aagtttgacgacttccagaaggacctgaaggccaacgagtctcgtctgagggacatcaac
aaggtggcgtctgagctggagtctgagggcctgatggtcgaggaggcaaccatggtccaa
gctcaggaacaagtaatggtgggttccacacctggcaaggatgatgccgattccaaaaat
gcttcaccatggaagaatgtacgcttggctgttcaaacgacggctaactttaatactatc
aaggagctgaacaaccgctggaggtccctgcagcagctggctgaggagagaagcaacatg
ctggggagtgcccatgaggtgcagaggttccacagggatgcggatgagaccaaggagtgg
atcgaggagaagaaccaggccctgaacacagacaactacggccacgacctggctagcgtt
caggctctgcagcgcaaacatgagggctttgagagagacctggccgccctgggagacaag
gtgaactctctgggggagacggcagagcgtctgatccagtgccacccggaggctgtggac
gacatccaggagaagtgcacagagctcaacacggcctggagcagcctagtggcgcgtgcc
gaccagcgcaaggacaagctgggcaactcccacgacctgcagcgcttcctctccgacttc
agggacctgatgtcctggatcaatggcatccgaagcttggtctcctcagaggaactggcc
aaagatgtgaccggggctgaggccctgctggagagacaccaggagcaccgtactgagatc
gacgcccgtgcaggcaccttccaggcctttgagcagtttggccagcagctgttggcacgc
ggccactacgccagtccggagatccagcagaagctggaggccctggaccgcgagagggcc
gacctggagaaggcctgggtccagagacgcatgatgctggaccaatgcctggagctccag
ctgttcaaccgtgactgtgagcaggctgagaactggatggcagcgcgcgaggccttcctg
gccagcgacgacaagggcgactcccttgacagcgtggaggccctcatcaaaaaacacgag
gactttgacaaggccatcaacgtgcaggaggagaagatcgctgccctgcagtcctttgct
gaccagctggtcggcgctgaccactacgccaagcctgagatcttcaaacgtcgcaacgaa
gtcctggacaggtggcgccgtctgaaggcccagatgattgagaagcgctccaagctgggc
gagtcccagaccctgcagcagttcagccgtgatgtggacgagatcgaggcctggatcagc
gagaagctgcagacagccaccgacgagtcctacaaggaccccaccaacatccagctgtcc
aagctgctgagtaagcaccagaagcaccaggccttcgaggcggagctgcatgccaacgca
gaccgcatccgcggggtcatcgacacgggcaacgccctcatccagagaggggcctgcgcc
ggcagtgaggacgcagttcagtcacgtctcggtgctctggatgagcagtggcagttcctg
gtgaacaagtcagcagagaagagccagaagctcaaggaagccaacaagcagcagaacttc
aacactggcatcaaggactttgacttctggctatctgaggtcgaggcccttcttgcctct
gaggattatggcaaagacctggcctcagtcaataacctgctgaagaaacaccagcttctg
gaagccgacatctctgctcatgaggaccgcctgaaggacctgaacggccaggccgacagc
ctgacggccagcacggccttcgaccccacccaggtcaaggacaagcgcgacgccgtcaac
ggacgcttcgccaagatcaagagcatggccgccgtccgccgcgccaagctcaacgagtca
caccgcctgcaccagttcttcagggacctggacgacgaggagtcttggatcaaagaaaag
aaattgctagtgagttcggaagactatggacgtgatttgacaggagtgcagaatctgagg
aagaaacacaagaggctggaagctgagttgggggcccacgagccagccatccagtctgtg
caggacactgggaagaagctgtccgatgacaacaccatcggccaggaggagattgagcag
aggctgggccagtttgaggagcactggaccgagctgaaggacctggctgcagccaggggt
cagaggctggaggagtcgctggaataccagcagtttgttgcgaatgttgaagaggaggaa
gcctggattaatgagaagctgaatctggtgggaagcgaagactacggggataccctggcc
gccgtgcagggcctgttaaagaagcatgaggcgtttgagactgacttcaacgtgcacagg
gacagagtgaatgatgtgtgttccaacggagacgagctcatcaagaagaacaaccaccac
gtggacagcatctcagccaagatgacatccctgcggggcaaggtgtctgagctggagagg
gctgctgccatgaggaaagccaagctggacgagaactctgccttcctgcagttcaactgg
aaggccgacgtggtggagtcctggatcggtgagaaggagaatagcctgaagactgatgac
tacggacgagatctctcctctgtgcagacgttgctcactaagcaggagacgtttgacgct
ggtctgcaggccttccagcaggagggcatcaccaacatcacggccctcaaggaccagctg
ctggcggccaagcacgtccagtccaaggccatcgaagcccgccacgccgcactcatgaag
cgctggaaccagctgctcgacaactcacaggctcgcaagaagaagctgctggaggcccag
gagcacttcaggaaggtggaagacctcttcctgacctttgccaagaaggcatcggccttc
aatagctggtttgagaacgcagaggaggacctgacggaccctgtgcgctgcaactcgctg
gaggagatccgggcactgcgcgatgcccacgaggccttccgttcgtcgctgagctcggca
caggccgacttcaaccagctggccgagctggaccggcagatcaagagttaccaggtggtg
tccaacccctacacctggttcaccatggaggccctggaggagacctggagaaacctgcag
aagatcatcaaggaacgagagctggagttgcagaaggagcagaggaggcaggaggagaac
gacaagctgcggcaggagtttgcgcagcatgccaacgcattccaccagtggctgcaggag
accaggacatatcttctggatgggtcctgcatggtagaagagtccggaaccttggaatca
cagcttgaggcaaccaagcgtaagcaccaggagatccgggccatgcgcagccagctgaag
aagatcgaggacttgggagcggccatggaggaagccctgatcctggacaacaagtacaca
gaacacagcacggtgggcctggcccaacagtgggaccagctagaccaactgggcatgagg
atgcagcacaacctggagcagcagatccaggccaggaacaccactggagtgacagaggat
gccctgaaggagttcagcatgatgttcaagcactttgacaaagagaagtctggccgttta
aaccatcaggagttcaagtcgtgtctgcgctcgctgggttacgacctgcccatggtggag
gagggagaaccagaccccgagtttgagtccatcctcgacacggtcgatcccaacagggat
ggcaacgtgtccttgcaggagtacatggccttcatgatcagccgcgagacagagaacgta
aagtccagcgaggagattgagagcgccttccgagccctcagcgtcgatgccaagccctat
gtcaccaaggaagagctctaccagaacctgagcaaggaacaggcagactactgcatctcg
cacatgaagccctacctagacagcaagggccgggaaatgacctcggccttcgactttgtt
gaattcacccgctcgcttttcgtcaactga
DBGET
integrated database retrieval system
