Coregonus clupeaformis (lake whitefish): 121541459
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Entry
121541459 CDS
T08357
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04137
Mitophagy - animal
cclu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121541459
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121541459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121541459
03009 Ribosome biogenesis [BR:
cclu03009
]
121541459
04131 Membrane trafficking [BR:
cclu04131
]
121541459
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121541459
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121541459
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121541459
Membrane trafficking [BR:
cclu04131
]
SNARE
SNARE associated proteins
Others
121541459
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121541459
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121541459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_5
AAA_33
CDC48_2
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_lid_PRS2_C
AAA_24
NB-ARC
TsaE
ResIII
Sigma54_activat
NACHT
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
121541459
NCBI-ProteinID:
XP_041706421
LinkDB
All DBs
Position
27:complement(12582496..12631099)
Genome browser
AA seq
805 aa
AA seq
DB search
MASGGESKNDLSTAILKQKTRPNRLVVDESLNEDNSVVSLSQAKMDELQLFRGDTVLMKG
KKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDD
TVEGITGNLFEVYLKPYFMEAYRPIRKADIFLVRGGMRAVEFKVVETDPNPYCIVAPDTV
IHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGI
LLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII
FIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG
RFDREVDIGIPDATGRLEILQIHTKNMKLSDNVDLEQVANQTHGHVGADLAALCSEAALQ
AIRKKMDLINLEDETIDAEVMSSLAVTMDDFRWALSQSNPSALRETVVEVPNVSWEDIGG
LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS
IKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRVI
NQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRINILSANL
RKSPIAKDVDLDFLAKMTNGFSGADLTEICQRACKMAIRESIENEIRRERERQTNPSAME
VEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPTSSAPGA
GPSQGSAGGSGGTVFNEDNDDDLYG
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaggaggagaatcaaaaaatgatctatccacagcgattttaaagcagaagacc
aggcccaaccggttggttgtggatgaatctctcaatgaggacaacagtgtggtttctctg
tctcaggcaaagatggatgagttgcaactgttcaggggagacaccgtgctgatgaaagga
aagaagaggcgggagacggtatgcatcgtgctctctgacgacacctgctccgacgagaag
gtccgcatgaacagagtggtccgcaacaacctgagagtccgcctgggagatgtcatcagt
attcagccatgcccagatgtaaagtatgggaagcggatccacgttctgcccatcgatgac
actgtggaggggatcacagggaacctgtttgaggtctacctcaagccctacttcatggag
gcctacaggcccatcaggaaagcggacattttcttggtgaggggaggcatgcgtgcagtg
gagttcaaagtagtggagacggatcccaacccctactgcatcgtggccccagacactgtc
atccactgtgagggcgagcccatcaaacgagaggatgaggaggagtctctgaatgaggtt
ggctatgatgacattgggggcgtgaggaagcagctggcccagattaaggagatggtggag
ctgcccctgagacacccagcactgttcaaggccatcggtgtcaagcctccaaggggtatc
ctgctgtacggaccccctggaacaggaaagacattgatcgcacgtgccgtggccaacgag
actggagccttctttttccttatcaatgggcctgagatcatgagtaaactggccggagag
tctgagagtaacctgaggaaggccttcgaggaagctgagaagaatgcccccgccatcatc
ttcattgacgagctggacgccattgcaccaaaaagagaaaagacacacggtgaggtggag
aggcgcatcgtgtcccagctcctcacactcatggacggcctaaagcagcgcgctcacgtc
atcgtcatggcagccaccaacagacccaacagcattgaccccgccctgaggcgatttggg
cgttttgacagggaggtggacatcggcatccctgacgccacaggcagactggagatcctc
cagatacacaccaagaacatgaaactgtccgacaatgtggacctcgagcaggttgccaat
cagactcacggccatgtgggtgctgacctggccgctctgtgctctgaagccgccctgcag
gccatcaggaagaagatggatctcatcaacctggaggacgaaaccattgacgcagaggtc
atgagctccctggctgtcaccatggatgacttcagatgggctctaagccaaagcaacccg
tctgcactgagagagacggtggtggaggtgcccaacgtcagctgggaagacatcggaggt
ctggaggacgtcaagagggaactccaggagcttgtacaataccctgtggagcacccagac
aagttcttgaagttcggcatgaccccgtccaagggcgtgctgttctacgggcccccaggt
tgtggtaagaccctgctggccaaagctatcgccaacgagtgccaggccaacttcatctcc
atcaaaggacctgagctgctcacaatgtggttcggagagtccgaggccaatgtccgagag
attttcgacaaggctcgccaggccgccccctgtgtgctcttctttgacgagctggactcc
atcgccaaggcgcgtggcggcaacgtgggggatggtggcggagcggccgaccgtgtcatc
aaccagatcctgacagagatggacggcatgtccagcaagaagaacgtcttcatcatcggc
gccaccaacaggcctgatatcatcgacccggccatcctgaggcccggcagactggaccag
ctcatctacatccccctgccagacgagaagtcccgcattaacatcctcagcgccaacctc
aggaagtcgcccatcgccaaggatgtggacttggatttcctggccaagatgaccaatggt
ttctctggagctgacctgacagagatctgccagagagcctgtaagatggccatcagggag
tccatcgagaacgagatcaggagggagagagagaggcagaccaacccctcagccatggag
gttgaggaggacgaccctgtcccagagatccgtaaggaccactttgaggaggccatgcgt
ttcgcccgccgctcggtcagcgacaacgacatccgcaaatacgagatgttcgcccagaca
ttacagcagagcagaggcttcggcagcttccggttccccactagctctgcgccaggcgcc
gggcccagccagggctctgctggtggcagcggtggcacagtcttcaacgaggacaacgat
gacgacctctatggttaa
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