KEGG   Coregonus clupeaformis (lake whitefish): 121541459
Entry
121541459         CDS       T08357                                 
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04137  Mitophagy - animal
cclu04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    121541459
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    121541459
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121541459
   03009 Ribosome biogenesis [BR:cclu03009]
    121541459
   04131 Membrane trafficking [BR:cclu04131]
    121541459
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121541459
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     121541459
Ribosome biogenesis [BR:cclu03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    121541459
Membrane trafficking [BR:cclu04131]
 SNARE
  SNARE associated proteins
   Others
    121541459
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    121541459
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121541459
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_5 AAA_33 CDC48_2 AAA_2 TIP49 AAA_22 AAA_14 NPHP3_N RNA_helicase Vps4_C AAA_28 nSTAND3 Parvo_NS1 Mg_chelatase AAA_17 IstB_IS21 ATPase_2 AAA_18 AAA_7 ATPase DUF815 ABC_tran AAA_lid_PRS2_C AAA_24 NB-ARC TsaE ResIII Sigma54_activat NACHT Viral_helicase1 SLFN-g3_helicase KAP_NTPase Zot
Other DBs
NCBI-GeneID: 121541459
NCBI-ProteinID: XP_041706421
LinkDB
Position
27:complement(12582496..12631099)
AA seq 805 aa
MASGGESKNDLSTAILKQKTRPNRLVVDESLNEDNSVVSLSQAKMDELQLFRGDTVLMKG
KKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDD
TVEGITGNLFEVYLKPYFMEAYRPIRKADIFLVRGGMRAVEFKVVETDPNPYCIVAPDTV
IHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGI
LLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAII
FIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG
RFDREVDIGIPDATGRLEILQIHTKNMKLSDNVDLEQVANQTHGHVGADLAALCSEAALQ
AIRKKMDLINLEDETIDAEVMSSLAVTMDDFRWALSQSNPSALRETVVEVPNVSWEDIGG
LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS
IKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRVI
NQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRINILSANL
RKSPIAKDVDLDFLAKMTNGFSGADLTEICQRACKMAIRESIENEIRRERERQTNPSAME
VEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPTSSAPGA
GPSQGSAGGSGGTVFNEDNDDDLYG
NT seq 2418 nt   +upstreamnt  +downstreamnt
atggcttcaggaggagaatcaaaaaatgatctatccacagcgattttaaagcagaagacc
aggcccaaccggttggttgtggatgaatctctcaatgaggacaacagtgtggtttctctg
tctcaggcaaagatggatgagttgcaactgttcaggggagacaccgtgctgatgaaagga
aagaagaggcgggagacggtatgcatcgtgctctctgacgacacctgctccgacgagaag
gtccgcatgaacagagtggtccgcaacaacctgagagtccgcctgggagatgtcatcagt
attcagccatgcccagatgtaaagtatgggaagcggatccacgttctgcccatcgatgac
actgtggaggggatcacagggaacctgtttgaggtctacctcaagccctacttcatggag
gcctacaggcccatcaggaaagcggacattttcttggtgaggggaggcatgcgtgcagtg
gagttcaaagtagtggagacggatcccaacccctactgcatcgtggccccagacactgtc
atccactgtgagggcgagcccatcaaacgagaggatgaggaggagtctctgaatgaggtt
ggctatgatgacattgggggcgtgaggaagcagctggcccagattaaggagatggtggag
ctgcccctgagacacccagcactgttcaaggccatcggtgtcaagcctccaaggggtatc
ctgctgtacggaccccctggaacaggaaagacattgatcgcacgtgccgtggccaacgag
actggagccttctttttccttatcaatgggcctgagatcatgagtaaactggccggagag
tctgagagtaacctgaggaaggccttcgaggaagctgagaagaatgcccccgccatcatc
ttcattgacgagctggacgccattgcaccaaaaagagaaaagacacacggtgaggtggag
aggcgcatcgtgtcccagctcctcacactcatggacggcctaaagcagcgcgctcacgtc
atcgtcatggcagccaccaacagacccaacagcattgaccccgccctgaggcgatttggg
cgttttgacagggaggtggacatcggcatccctgacgccacaggcagactggagatcctc
cagatacacaccaagaacatgaaactgtccgacaatgtggacctcgagcaggttgccaat
cagactcacggccatgtgggtgctgacctggccgctctgtgctctgaagccgccctgcag
gccatcaggaagaagatggatctcatcaacctggaggacgaaaccattgacgcagaggtc
atgagctccctggctgtcaccatggatgacttcagatgggctctaagccaaagcaacccg
tctgcactgagagagacggtggtggaggtgcccaacgtcagctgggaagacatcggaggt
ctggaggacgtcaagagggaactccaggagcttgtacaataccctgtggagcacccagac
aagttcttgaagttcggcatgaccccgtccaagggcgtgctgttctacgggcccccaggt
tgtggtaagaccctgctggccaaagctatcgccaacgagtgccaggccaacttcatctcc
atcaaaggacctgagctgctcacaatgtggttcggagagtccgaggccaatgtccgagag
attttcgacaaggctcgccaggccgccccctgtgtgctcttctttgacgagctggactcc
atcgccaaggcgcgtggcggcaacgtgggggatggtggcggagcggccgaccgtgtcatc
aaccagatcctgacagagatggacggcatgtccagcaagaagaacgtcttcatcatcggc
gccaccaacaggcctgatatcatcgacccggccatcctgaggcccggcagactggaccag
ctcatctacatccccctgccagacgagaagtcccgcattaacatcctcagcgccaacctc
aggaagtcgcccatcgccaaggatgtggacttggatttcctggccaagatgaccaatggt
ttctctggagctgacctgacagagatctgccagagagcctgtaagatggccatcagggag
tccatcgagaacgagatcaggagggagagagagaggcagaccaacccctcagccatggag
gttgaggaggacgaccctgtcccagagatccgtaaggaccactttgaggaggccatgcgt
ttcgcccgccgctcggtcagcgacaacgacatccgcaaatacgagatgttcgcccagaca
ttacagcagagcagaggcttcggcagcttccggttccccactagctctgcgccaggcgcc
gggcccagccagggctctgctggtggcagcggtggcacagtcttcaacgaggacaacgat
gacgacctctatggttaa

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