Coregonus clupeaformis (lake whitefish): 121541497
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Entry
121541497 CDS
T08357
Name
(RefSeq) laminin subunit gamma-3
KO
K06247
laminin, gamma 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121541497
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121541497
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Gene cluster
GFIT
Motif
Pfam:
Laminin_N
EGF_laminin
EGF_LMN_ATRN
Laminin_B
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
121541497
NCBI-ProteinID:
XP_041706488
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Position
27:9215278..9439327
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AA seq
1620 aa
AA seq
DB search
MDTPLTTPLLLLCSLSFVHGAMDSCYDDDEGVPSRCMPKFENAAFNRTIMASNVCGSPPE
DYCMQTGSTRSCHHCSISDTGLSHNASLLTDFHTDEEPTWWQSQSMFYRVQHPNSVNLTL
HLGKAFEITYVRLKFYTSRPESFAIYKRTSEDGPWTPYQYYSASCSKTYGKNAKGYIRPG
DDERMAVCTDEFSDISPLSGGNVAFSTLEGRPSAYNFDQSAVLQEWVTATDLLISLDRLN
TFGDEFFKDAKVLRSYFYAISDFSVGARCKCNGHGSECVLDEQGALVCDCQHHTAGVDCQ
KCHPFYQDRPWARATGDSANQCMKCNCSGRADACVFDAEQYRSTGSGGRCVDCRDHTDGP
HCERCKENHYRRSPQDLCRPCDCNAIGSVSLQCGAEGMCMCRPSVTGEKCDTCQPGFHSL
SPGGCRSCDCEPRGSVGICSTLDGGCHCKENVEGQACDRCKPGSFNLLENNPAGCMSCFC
FGHSLACRSSNRHAAVNITSDFLEDPDGWSGQFSGGQEYPLLWKEGEVYLLPLSEDDLGF
YRAPEKFLGNHLLSYGQLLSLTFTAEAQCLLPHSVTVLLEGSGTTLSADLSPQPGLVHQP
GLAPQHTFTLRLHEEETRLRPFLSAFEFQCLLFNLTAFRISNAGGHNYTSQLSEVTLASA
APSSSPVTPSTPPAPWVEVCTCPPGFGGQFCELCAPGYTREVPNGGPLSPCVPCTCHQHG
PCHPETGVCECADFTTGPNCEHCLGGYYGNALIGTTNDCRTCPCPDRTSCAQMMEMGDVV
CTNCPPGQRGTRCEMCEDGFHGDPLGRSGLVRQCERCDCNGNVDPNALGVCDHMTGRCIK
CLGHTEGDHCQRCRRGYYGDAMDRTMARKCKPCDCSPAGTSGLLEDCDPQTGSCQCLSHV
TGGNCGQCSVGFFNLQPGVGCERCNCNPIGSSSTACHQITGQCVCRPGVEGRLCSTCRMG
FFDFSSRGCRACNCNPMGSSSMQCHTNGTCPCRHGFVGYKCDQCELNYFHNRATHQCEEC
PICYGLVKEQAGKLKARLQNLEKLLARFDCRSDYGRQHHVREYHVRQHHERGHQGEDSLP
NALEEFLAIQEAKEAFVEQFALLELSTHTLSAQLHTVTTAMNCSASMEEEQKEEEKEEGW
RTLCRTLADSVSVVRSARTQLKQATLDLDNMVIPFKVTTVPNRWNSAVNESEGLMKSHTE
MAGRIESIATKAFMASNQTYSLLMDLLEDNSTEEYISNLTEQMADMQQMKENLTAQVNET
VANQLSLEEESAEIMVALGNLTSSLLELSKNRPNPTSGTNQSEGDELSNRTSELAFHVQS
KEELVSKIREEMAPRIQTAHNSIAAVQDMYKLTVQAQGSKVMALSSVVTGKEVESKAITL
RRELEDIQREWPQRQAQTKAALKRERLLREKVLEDVRKKVNQTERVLRPALESATLSNAT
AQQAEHTAHTLSKEAKATLTQGKHTRTLSGQLSSSVDTTLQQLAEQENHTTQAQAQLNAE
PVESLASVKANIQAAKLQLEAYSLKLSQLISKIDGSVALERFDHILSETAVRLGVLRGSV
ESPFLNGKIQTLRSAAQDQKSQLTHLEQDLQEIRQERDSLKDIALHLPQTCPQASGIEGH
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atggataccccactgaccaccccactcctcctcctctgctccctctcctttgttcacggg
gccatggactcctgctacgatgacgatgagggcgtccctagccgttgcatgcccaagttt
gagaacgcagccttcaaccgcacgatcatggcttccaacgtgtgtggttcaccgccggag
gactactgcatgcagacgggctcgacacgctcctgccaccactgtagcatatcggacaca
ggcctcagccacaacgccagcctgctgacggacttccacacagacgaggaacccacctgg
tggcagagccagtccatgttctacagagtccagcaccctaactccgtcaacctcaccctg
caccttggtaaagcctttgagatcacctacgtgcggctcaagttctacaccagccgaccg
gagagctttgccatctacaagcggacaagtgaggatggaccatggacgccctaccagtac
tacagcgcctcctgtagcaagacctatgggaaaaacgccaagggatatatccgcccgggg
gatgacgagaggatggcagtgtgcaccgatgagttcagtgacatctcccctttgagtggg
ggcaacgtggccttctctaccctggagggacgacccagcgcatacaactttgaccagagc
gccgtgttacaggagtgggtgacagccaccgacctgctgatctctctggataggctcaac
acttttggagacgagttcttcaaggacgccaaggtgctgcgatcctacttctacgccatc
tctgatttctctgtgggagccaggtgtaagtgtaatggtcatggcagtgagtgtgtgttg
gacgagcagggggctctggtgtgtgactgccagcatcacacagctggggtggactgccag
aagtgtcatccgttctatcaggacaggccatgggccagggccaccggagactctgccaac
cagtgtatgaagtgtaactgcagtgggcgagcggatgcgtgtgtgttcgatgcggagcag
taccgtagcacagggagtggggggcgctgtgtggactgtagggaccacactgatggaccg
cactgtgaacgctgcaaagagaaccactaccgacggtcaccacaggacctatgcaggccc
tgcgactgtaacgccataggttctgtgagtctgcagtgtggtgcagaggggatgtgtatg
tgcagacccagtgtgacgggggagaagtgtgacacctgtcaacccggcttccactcgctc
agccctggcggctgcaggtcgtgtgactgtgaacccaggggcagtgttggcatctgctct
acgctggacggtggctgtcactgcaaggaaaacgtggagggacaggcgtgtgacaggtgc
aagccaggctccttcaacctgctggagaacaacccagctggctgcatgtcatgtttctgc
ttcggacactcattggcctgcagatcctccaatcgccatgcagctgtcaacatcacttct
gacttccttgaagacccagatggctggtctggacagttctctgggggacaggagtaccct
ctgctgtggaaggaaggggaggtctacctgctaccactcagtgaggacgacctgggcttc
tacagagctccagagaagttcctggggaaccatctcctgagctacggccagctcctctcc
ctgaccttcacggccgaggctcagtgcctcctccctcacagtgtcactgtgcttctggaa
ggatctggaaccaccctgtcagctgacctttcaccccaacctggacttgtccaccagcca
ggcctcgctccccagcacaccttcactctcagacttcacgaggaggagacaagactgagg
cctttcctgtctgccttcgagttccaatgtcttctcttcaacctcactgcattcaggatc
agcaacgcaggaggacacaactacacgtcccaactctcagaggtaaccctggcctccgct
gccccctcctccagccctgttaccccctctaccccccctgctccctgggttgaggtgtgt
acgtgtcccccgggatttgggggtcagttctgtgagctgtgtgccccagggtacaccaga
gaggtccctaacggaggaccgctgtcaccctgtgtgccctgcacctgccaccagcacgga
ccctgccaccctgagacaggtgtgtgtgagtgtgccgacttcaccacaggaccgaactgc
gagcactgcctgggtggttactatggcaacgcgttgattggcacaaccaacgactgtcga
acttgcccctgcccggaccgcactagctgtgctcaaatgatggagatgggggatgtggtc
tgtaccaactgccctccaggacagaggggaaccaggtgtgagatgtgcgaggacggtttc
cacggtgaccccctgggccggtctgggctggttcggcagtgcgagcggtgcgactgtaac
ggtaacgtggaccccaacgcgctaggcgtgtgtgatcacatgacgggccgctgcattaag
tgtctgggacacacagagggagaccactgtcaacgttgccgacgcggttactatggagat
gccatggaccggacgatggcccggaagtgcaaaccctgcgactgcagtcctgcagggact
tctgggctgttggaggactgtgacccccagacaggaagttgtcagtgccttagtcatgtg
accgggggaaactgtggccagtgttcagtcggcttcttcaatctgcagcctggagtaggc
tgtgagaggtgcaactgtaaccccattggctcgtcttccacggcgtgccaccagatcaca
gggcagtgtgtgtgtcggccgggagtggaggggcggctgtgcagcacctgtcgtatgggc
ttctttgatttctcctcgcgaggctgcagagcctgtaactgcaaccctatgggatccagc
tccatgcagtgccacacaaatggcacctgtccctgccgccacggcttcgtggggtacaag
tgtgaccagtgtgagctcaactacttccacaacagagccacgcaccagtgtgaagaatgc
cccatctgctatgggttggtcaaggagcaggcagggaaactgaaggcacggctgcagaat
ttggagaagctcctggcacgcttcgactgccggagtgactacgggcgccagcatcacgtg
cgtgagtatcacgtgcgccagcatcacgagcgtgggcatcagggggaggacagcctgccc
aatgccctggaggaattcctggctatccaagaggcaaaagaagcctttgtcgaacagttt
gctctcctggagttgtctacacacactctctcagcccagctgcacactgttaccacagct
atgaactgtagcgccagcatggaggaagagcagaaggaagaggagaaggaggaagggtgg
agaacattgtgcaggacccttgctgactctgtgtcagtggttagaagtgcacggacccag
ctgaagcaggcaactctggacctggacaacatggtcattcctttcaaggtgacaactgtg
cccaaccgctggaattctgcagtgaacgaatcagagggacttatgaaaagtcacacagag
atggctggtcgtatagagtctatagcgaccaaggctttcatggcctccaaccagacctac
tctctcctgatggacctactggaggacaattctacagaggaatacatcagcaacctcacg
gagcaaatggcagacatgcagcagatgaaggaaaatttgacggcccaggtgaatgagact
gtagccaatcagctgtctctggaggaggagtctgctgagatcatggttgcccttggtaac
ctcacctcctccctattggagctgtccaaaaataggcccaaccccacatcgggaaccaac
caatcagagggtgatgagctgagcaacaggacatctgagctggcattccatgtccagtct
aaagaagaactggtcagtaagatcagagaggagatggcgcctcgaatacagaccgcccac
aacagcattgctgccgtacaggatatgtacaaactgacagttcaagcccaggggtcaaag
gtcatggccctgtcatcggtggtgacagggaaagaagtggagtcaaaggccattaccctg
cggagagaactggaagacatacagagagagtggcctcaaaggcaggcccagacgaaggct
gctctgaagagggagaggctgctgagggagaaggttctggaagacgtcaggaagaaggtg
aaccagacagagagagtcctgaggcctgccttggagagcgctaccctctccaacgctacc
gcacaacaggcagaacacaccgcacacaccctgtctaaagaggccaaggccaccctaacc
cagggcaagcacacaaggacattgtctggccagctcagctcctctgtagatacaaccctg
cagcagctggctgagcaggagaaccacactacccaggcacaagcccagctcaacgcagag
cctgtagagtctctggccagtgtaaaggcgaacatccaggcagctaagcttcagctggag
gcctactcactcaaactcagccagctcatcagtaaaatagatgggagcgtggcgctggaa
cggtttgaccatatactgagtgagacggcggtgcggttgggtgttctgcgtggcagcgtg
gagagcccgttcctgaatgggaagatccagactctacgatcagccgcccaggaccagaag
agccagctgacccacctggaacaggacctgcaggagatcagacaggagagagacagtctg
aaggacattgccctgcacctgccccagacctgccctcaggcctcggggatagagggacac
tag
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