Coregonus clupeaformis (lake whitefish): 121541548
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Entry
121541548 CDS
T08357
Name
(RefSeq) pituitary homeobox 2-like isoform X1
KO
K04686
paired-like homeodomain transcription factor 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121541548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121541548
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
121541548
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
XRCC4_C
Motif
Other DBs
NCBI-GeneID:
121541548
NCBI-ProteinID:
XP_041706563
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All DBs
Position
3:19049930..19062543
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AA seq
319 aa
AA seq
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MNSMKDPLNLDHHHHHHLTGTKLSSTHHTALAMASSLQPLQRSVDSKHRLEVHTVSDTSS
PESVEKDSKGQSKTDDSSDDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEI
AVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYEDMYPSYTYNN
WAAKGLTSASLSTKSFPFFNSMNVNPLSSQTMFSPPNSISSMSMTSSMVPSSVTGVPGSS
LNSLNNLNNLSNPSLNSGVPTPTCPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYTS
VQNPVSNLSACQYAVDRPV
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgaactctatgaaggatccattgaatttggaccatcaccaccaccaccacctaaccggg
actaaactctcctccacgcaccacacggcactagcaatggcctctagtctgcagccgttg
cagcggtctgtggactccaaacaccggttagaggtgcacacagtatcagacacctccagt
ccggagtccgtagagaaagactcaaagggccagagcaaaactgacgactcttcagatgat
ccttctaaaaagaagcgacagcggcgacagaggactcacttcacaagccagcagctacag
gaactggaggccacgttccagaggaatcgctatccggacatgtctacaagagaggagata
gcggtgtggaccaacctcacagaggcccgcgtcagggtgtggttcaagaaccggcgagca
aaatggaggaaaagggaaagaaaccaacaagccgagctatgcaagaacggcttcggtcct
cagttcaatggacttatgcagccctatgaagacatgtaccccagctacacatacaacaac
tgggcggccaaagggctaacttcggcctccttgtccaccaaaagcttcccttttttcaat
tccatgaacgtcaaccctttgtcatcgcagacgatgttctcgccgccgaactccatctct
tcaatgagcatgacctccagtatggtgccgtcctcggttactggcgtacccggttcgagc
ctcaacagcctcaataacttaaacaaccttagcaacccctctctgaattcgggagttccc
acgccaacctgcccgtacgccccgccgacccctccttatgtgtacagggacacttgtaac
tccagtctggctagcctgagactgaaagccaagcagcactcgagttttggatacaccagt
gttcagaatccagtctcaaatctgagcgcgtgccagtacgccgtggatagaccagtgtaa
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