Coregonus clupeaformis (lake whitefish): 121541573
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Entry
121541573 CDS
T08357
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121541573 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121541573 (prpf4)
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
121541573 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
PRP4
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Vps41
WD40_like
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
DUF7779
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
121541573
NCBI-ProteinID:
XP_041706603
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All DBs
Position
27:17049099..17062495
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AA seq
506 aa
AA seq
DB search
MSDDEEAPLVKKTRIFYGSLEEKERERLGREASGSGKDSVKAGIEAGNINISSGESLELE
ERVSERQSEVLADFERRKRARQITVSTDDAEVKACLRALREPITLFGEGPAERRERLRNI
LSVVGPDALKKSKKDDEKSKRSQEECQQTWYHEGPTTLKEARLWLARYSLPRAVKRLEAA
RAHREIPESTRTVRTQELHKTLRNLNNFCSQIGDDRPISFCQFSPNSKMLVTASWSGLCK
LWNAPDCTLVRTLRGHNTHVGAICFHPQATLTLDDSDVNMASCAADGSVKLWSLDSDVPV
ADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDMQFHPD
GSLAATGGLDSFGRIWDLRTGRCVMFLEGHLKEIYSIDFSPNGYHAATGSGDNTCKVWDL
RRRKCIYTIPSHQNLVSSVKFQPNNGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKVM
GVDMSPDGQLIATCSYDRTFKLWMSE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgatgaagaagctccgctggtgaagaagaccaggatcttctatggcagtttg
gaggagaaggagagggagaggctgggacgagaggcctctgggtcaggcaaagattctgtc
aaagcaggaattgaggctggcaacattaacatctccagtggtgagtcccttgagcttgag
gaacgtgtgagtgagcgccagtctgaggtattggcagattttgagcgcagaaagagagcg
agacaaatcacagtatccacagatgatgcagaggtcaaagcctgcttacgggccctcagg
gaaccaatcacactgtttggggaggggcctgctgagagacgagagaggctaaggaatatc
ctctctgtagtgggtccagatgcattgaagaaatctaagaaggatgacgagaaatccaaa
cgctcccaagaggagtgtcagcagacgtggtaccatgagggaccgaccactcttaaggag
gcaaggctctggttggccagatactctctgccaagggccgtgaaaaggttagaagccgcc
agagctcacagggagatcccagaatctacacgaacagtccgaacacaagaacttcacaag
acgctcaggaacctgaataacttctgcagtcagattggtgacgacaggcctatatccttt
tgccagttcagccccaactccaaaatgctggtgactgcatcttggagtggcctgtgtaaa
ctgtggaatgctcctgactgtacccttgtccgtacccttcggggccacaacacccatgtg
ggggccatctgtttccatcctcaggccactctgactctggacgactctgatgttaacatg
gcctcctgtgctgccgacggctccgtcaaactctggagtctggacagtgatgtacctgta
gctgacatcgagggccactccatgagggtggcaagagtagcctggcacccctctggaagg
ttcctgggcaccacctgttatgataattcatggaggctgtgggacctggaggcccaggag
gagatcctgcaccaagagggacacagtaaaggagtccatgacatgcaattccaccctgat
ggatctctggcagctactgggggtctggattcatttgggcgtatttgggaccttcgcacc
gggcgctgtgtgatgttcctggagggccacctcaaagagatctacagcatcgacttctct
cccaacggctaccacgcagcaacaggaagtggggataacacctgtaaggtgtgggacctt
cgtcgcaggaagtgcatctacaccatcccctcccatcagaacctggtgtcctctgtcaaa
ttccagcccaataatggtcacttcctcctgaccggggcctatgacaacacagccaaggtg
tggacccacccgggctggtcccccctgaagaccctggcgggccacgagggcaaggtgatg
ggcgtggacatgtcccctgacggacagctcatcgccacctgctcctacgaccgcaccttc
aagctctggatgtcagagtga
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