Coregonus clupeaformis (lake whitefish): 121541645
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Entry
121541645 CDS
T08357
Name
(RefSeq) structural maintenance of chromosomes protein 5-like isoform X1
KO
K22803
structural maintenance of chromosomes protein 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121541645
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
121541645
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
AAA_25
AAA_29
IFT57
Motif
Other DBs
NCBI-GeneID:
121541645
NCBI-ProteinID:
XP_041706749
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All DBs
Position
27:23635992..23673188
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AA seq
1077 aa
AA seq
DB search
MASVGKRKRVSNVTNTQTSNNGARSYSGIKTDPRAVGDGKMAGFVEGSILCITMQNFLTY
DHSIVHPGPNLNMIVGANGTGKSSIVCAICLGLAGKTAILGRGDKVGLYVKRGCNKGSVE
IELYKAGANLVINREIHVENNQSVWMLNGRHSSQKAVEEEVKALQIQVSNLCQFLPQEKV
GEFAKITKIELLEATEKSVGPPEMYEFHCELKTFRTKERELENVCKEKASALEKFKQRNE
RNKHDVERYYEKKRHLDMIKMLEKKKPWVEYETARKELEGVKKERENAKKQLKTVRESQA
PTLKKIQHIDSQLRPIENQMKDKTARIREASQKCKQKRDHLDSKHREIEDIKQAFSLKQT
EEADRQKRISNTRRMIDDLRAELANLGDISDVTPRIDVVNTEQRRIQEEKAKMEGEKADL
RREKDNLNGECRLLKNRLRSLDDMMKIKEEKLRVRSRDTYAAVQWLRQNKHLFSGNVYEP
MMLVISVRNPNHAKYVENHIPFNDLRAFVFQKREDMEKFMTEVRDSQNLRVNSVFAPVES
CATRPPSRPIESLKRFGFFAYLRELFDAPEEVMSYLCNQYKVHDVPVGTDQTKAMIKTVI
DEPYLKVLYTAEEKYSLKKSFYSGKTSTSNSAVRPSQYLTMAVDAEDKRQLEEQISTAEK
SMQAIDAQMIATQESAAKLDRRDNELRAQKKALSELKGKKRQLEQKISTKQDSLRQMEQG
GIDLQKAEEETKAQISAVNSQKVAIVAEFMAHMKLRATLSMEKVYMALETVGMTAEKTKL
ETDCRDGSAELRVLEQACAMLEQRKARLLEKCKGLLRRAREICNMDPGESVVPPDLHTAF
SQLPDTLDEIDAMLNEERSRAECFTGLSENVVDEYNRREQEIKNLEKELDDKSNALDTYR
QNISEAKERWLNPLKQLVEQINDKFSDFFRSMQCAGEVDLHSENEEEYDKYGIRIRVKFR
SSTQLHELTAHHQSGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPVNERRVFDIVV
RTACKETTSQYFFITPKLLQNLQYADEMTVLCVHNGPHMLPPHKWDEKAFTRRRMVK
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgtgggcaaacgaaaacgagtaagtaacgtaacgaacacacaaacttcaaat
aatggagcacgctcgtactctggtattaaaactgacccacgtgccgttggagatggtaaa
atggctggatttgtcgaaggatccatactttgcatcacaatgcaaaacttcctaacctac
gaccactccatagttcaccctggaccaaacctgaacatgattgtgggagccaatggaact
ggcaagtccagtattgtctgtgccatatgtctgggtctggcaggaaagactgccatcctg
ggcagaggggacaaggttgggctgtatgtgaagcgtgggtgcaacaaaggatcggttgag
attgaattgtacaaggccggggcgaacctggtgataaacagagagatccacgtggagaat
aaccagtcagtgtggatgctgaatgggagacactccagccagaaggctgtggaggaggag
gtgaaggctctacagatccaagtgagcaacctctgccagttcctgccacaggagaaggtg
ggtgagtttgccaagattaccaagattgagctgctagaggccacagagaagtcagtggga
cctccagagatgtacgagttccactgcgagctcaagaccttccgcaccaaagagagggaa
ctggagaatgtgtgcaaggagaaggccagcgccctggagaagttcaagcagaggaacgaa
cggaacaagcatgacgtggagcgctactacgagaagaagagacacctggatatgattaag
atgctggagaagaagaaaccctgggtggaatatgagaccgcccgtaaggagctggagggg
gtgaagaaggagagggagaacgccaagaagcagctgaaaactgtgagggagtcccaagcc
cccacgctgaagaagatccagcacattgacagccagctgaggcccatcgagaaccaaatg
aaagacaagacagccagaatcagggaggcctctcagaagtgtaaacagaaacgggaccac
ctggacagtaagcacagagagattgaggacatcaagcaggccttcagcctgaagcagact
gaggaggcggaccggcaaaagcgaatcagcaacacccgacgcatgattgacgacctgcgg
gcagagctggctaacctgggcgacatatcggacgtgacaccgcggatcgatgtggtgaac
acagagcagaggcgcatccaggaggagaaggccaagatggagggagagaaggccgacctt
cgcagggagaaggacaacctgaacggagagtgtagactgttgaagaacaggctgagaagt
ctggatgacatgatgaagatcaaggaggagaagctgagagtgcgctccagggacacctac
gctgccgtccagtggctgaggcagaacaaacacctcttcagtggcaatgtctatgaaccc
atgatgctagtgatcagtgtccgcaaccctaaccatgccaagtacgtggagaaccacatt
cctttcaacgacctgcgggccttcgtcttccagaagagggaggacatggagaagttcatg
acggaggtacgtgacagccagaacctgagggtgaattcagtctttgctcctgtggagtcc
tgtgccacacgccccccttcccgacccattgagtccctgaagcgctttgggttctttgcg
tacctgcgggagctcttcgatgctccagaagaggttatgagctacctctgcaaccagtac
aaggtgcacgatgttcccgtgggaacggaccaaaccaaagccatgatcaagacggtgatt
gacgagccttatctgaaggtgctctacacggctgaggagaagtactccctgaagaagtcc
ttctactcgggcaagaccagcaccagtaactctgccgtgcggccctcccagtacctcacc
atggccgtggacgccgaggacaaacgccagctggaggagcagatcagtacggctgagaag
agcatgcaggccatcgacgcacagatgatagccacgcaggaaagtgctgccaaacttgat
cgccgtgacaacgagctgcgggcccagaagaaggcgctctcggagctgaagggcaaaaag
agacagctggaacagaagatcagcaccaagcaggacagtcttcggcagatggagcagggg
ggcattgatctgcaaaaggctgaggaagagaccaaggcccagatctcagcagtcaactcc
cagaaggtggccattgtggctgagttcatggcccacatgaagctgagggctacgttgagt
atggagaaggtgtacatggctctagagaccgtgggcatgacagcagagaagaccaagctg
gagactgactgcagggacggctcggctgagctcagggtcctagagcaagcgtgtgccatg
ctggagcagcgtaaggcccgtctattggagaaatgtaagggcctgctgaggagggccagg
gagatctgtaacatggatcctggagagagtgttgtacccccagacctacacacggccttc
agccagctgcccgacactctggatgagatagatgccatgttgaatgaggagaggtccagg
gcagagtgcttcactggcctcagtgagaatgtggtggatgagtacaacagaagagagcag
gagatcaagaacctggagaaagagctggatgacaagagcaatgcccttgacacctacaga
cagaacatatcagaggctaaggagcgctggctgaaccctctgaagcaactggtagagcag
atcaatgacaagttcagtgatttcttccgctccatgcagtgtgccggggaggtggatctg
cactcagagaatgaggaggaatatgataagtacgggatccgcatccgggtgaagttccgc
agcagcacacagctccacgagctcacagcacaccaccagagtgggggggaacgcagtgtt
tccaccatgctctacctcatggccctgcaagagctcaaccgctgccctttccgagtggtg
gacgagatcaaccagggtatggacccggtcaatgagaggagagtctttgacattgtggta
cggacagcctgcaaggagactacctcccagtactttttcatcacacccaagctcctgcag
aacctccagtatgcagatgagatgaccgtcctgtgtgtccataacggacctcacatgctg
cccccccacaagtgggatgagaaggccttcaccagacgccgcatggtcaaatag
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