Coregonus clupeaformis (lake whitefish): 121541690
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Entry
121541690 CDS
T08357
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-6
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121541690
04082 Neuroactive ligand signaling
121541690
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121541690
Ion channels [BR:
cclu04040
]
Ligand-gated channels
GABA-A
121541690
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Gene cluster
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
SAP130_C
Motif
Other DBs
NCBI-GeneID:
121541690
NCBI-ProteinID:
XP_041706865
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Position
3:9597877..9615831
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AA seq
558 aa
AA seq
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MVSAKKEMVTAKYPSYISTLFYLFCLTACVKRISGMIKKDERIFPENFTRILDRLLDGYD
NRLRPGFGGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWMDRRLRYEGPMEILRLN
NMMVSNVWTPDTFFRNGKKSVAHNMTAPNRLFRIMKNGTILYTMRLTISAECPMKLVDFP
MDGHACPLKFGSYAYPKTEMIYTWTKGPQNSVEVPQESSSLVQYDLIGHTVSSEEVKSIT
GEYVVMTVHFHLKRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMT
TLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNAEMERLKRMPPKCPP
APQTTPVKVKEEVLQHNPDPNGNPDTNGNLRKRMNYMSQQDGQKAESNSAAATGVTRKQP
QSGQSSSSTGATGGAIILPHSSPGPASQPNASSTLSVKNTPPAPPTTSTIPANQSQPTAD
SSLQDLLGPRLQHIQLMGKNEPKQSPCSQPTTAGMGGTSKIDKYARILFPVSFGAFNMVY
WVVYLSKDTMEAKFRGQI
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggtttctgccaagaaggagatggtgactgcgaagtaccccagttacatttcgactctc
ttctaccttttctgcctgactgcttgtgtaaagagaatctctggaatgataaaaaaggat
gagagaatatttcccgagaatttcacacgcattttagaccgactcctggacgggtatgac
aacagactgcgacctggatttgggggtccagtgacagaggtgaaaacagacatttatgtg
acaagtttcgggcctgtctctgatgttgagatggagtacaccatggacgtgttcttcaga
cagacatggatggacaggaggctgaggtacgaggggcctatggagatcctccgcctcaac
aacatgatggtctccaatgtgtggactccagacaccttcttcaggaatggcaagaagtct
gtggcccacaacatgaccgcccccaacaggctgttccgcatcatgaagaacggcaccatt
ctttacaccatgaggttgactatcagtgcagagtgtcctatgaagctggttgacttcccc
atggatggacatgcatgccctctcaagtttggaagctatgcataccctaaaacagagatg
atctatacctggaccaaaggaccacagaattcagtggaggttccccaagaatcctccagc
ctagtgcagtacgatctcattggccacactgtcagcagtgaggaggtcaaatcaatcaca
ggtgaatatgtggtgatgacagtgcacttccacttgaagcggaaaatgggctacttcatg
attcagacgtatatcccctgcatcatgacagtaatcctctcccaagtgtccttctggata
aataaggaatcggtcccggctcgaacagtctttggcatcaccacagtcctgaccatgacc
acgttgagcatcagtgcacgccactccctccccaaggtctcctacgccacggccatggac
tggttcatcgctgtgtgtttcgcctttgtcttctctgccctcatcgagttcgctgccgtc
aactacttcaccaacgcagagatggagagactgaaaaggatgccgccaaaatgcccaccg
gcgccccaaacaaccccggtgaaggtgaaggaggaagttctgcagcataaccctgacccc
aacggtaaccctgacaccaacggtaaccttcgaaaacggatgaactacatgtcccagcaa
gacggccagaaagctgagtccaacagcgcagcagctacaggggtaaccaggaaacaaccc
cagtctggccaatcgtcttcatccacgggggcgactgggggcgccatcatcctaccacac
tccagccccggccccgccagccaacccaacgcctcctccaccctgtccgtcaagaacacg
cccccggctccacccaccacctcgacaataccagccaatcagagccagcccaccgctgac
tcctccctccaggacctcctgggacccagactgcagcacattcagctgatgggcaaaaat
gagcccaagcagtcaccatgctcccagccgaccaccgccgggatgggcgggaccagtaaa
atcgacaagtacgctcgcatcctgttcccagtgtcctttggagcattcaacatggtctac
tgggtggtttacttgtccaaagacaccatggaggccaaatttcgaggccaaatctag
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