Coregonus clupeaformis (lake whitefish): 121541710
Help
Entry
121541710 CDS
T08357
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like isoform X1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121541710
04121 Ubiquitin system [BR:
cclu04121
]
121541710
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
121541710
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
121541710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
hAT-like_RNase-H
DBD_Tnp_Hermes
DUF659
Rua1_C
Motif
Other DBs
NCBI-GeneID:
121541710
NCBI-ProteinID:
XP_041706895
LinkDB
All DBs
Position
27:complement(28691984..28694906)
Genome browser
AA seq
628 aa
AA seq
DB search
MADEREIIKPPLRSSVWKHFGFCKDGDVLNKSLAVCRICKGQVKYNGNTTNLSNHLLRRH
GISHNTDRPGTSCSVPAATAAKGKVNSAEASGLACMFSQRLGQNSARAKNITATIAKFIC
KDMQPYSVVENPGFREMIQTLEPRYTIPSRPHFSEKVIPALYESTKKDVKLSLSQAERVA
ITTDGWTSCSNQGYVTITSHHIDPEWKMKTFVLLTRVLNEAHTGKNIGALLREACMEWKI
YDKNPAIVTDNARNMIVASAEAQFSPHITCFAHTLNLASQKGLGVDRASRLLGKVRKIVG
YFHRSPIACHALQEKQTLMDLPKHKLIQDIITRWNSSFEMLERFLEQQPAIMATLMSKDL
RKGVTDVGTLSESDIANMDDIVQLMGPVKMATTMMCEEDQPTLSVIAPLQAKLLKHLQPC
EDDSTQVAEIKRVMASDLSTRYRGTQDALNIASALDPRFKELPYLEKEDREQVYTKLVFE
AEVSHQMQAMGNQEEDEGSSSTKLSGFNEETTAPNESPPCKKKALDALFGDSFTQRERKS
TSKTARAEVLRYRAKDALPLTENAMKWWRSQEKELPVLSTLAKRYLCIPGTSVPAERIFS
TAGDIVNAQRSVLRPDHVDELIFLKKNL
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgagcgagaaattatcaagccaccattgcggtccagtgtgtggaaacacttt
ggcttttgcaaagacggagatgttctaaataagtcgctcgctgtttgtaggatatgtaaa
ggtcaagtaaagtacaacggcaacacgacaaatctctccaaccacctactaaggcgccat
gggatttcacacaacaccgaccgtccaggcacctcttgcagcgttcccgctgctacagca
gcgaaaggtaaagtcaactctgcagaagcctcaggtctcgcctgcatgtttagtcagaga
ctaggccaaaactcagctcgggcgaaaaacatcacggcaacaattgccaagtttatctgc
aaagacatgcaaccctacagtgtggttgaaaatccgggattccgtgaaatgattcaaaca
ttggagccaaggtacacaataccaagccgaccacacttctcagaaaaggttattcctgca
ttgtacgaaagtactaagaaagatgtgaagctgtcgctttctcaagctgaacgagtagcg
ataacgacagatggctggacgtcatgctcaaatcaagggtatgtgacaattacctctcat
cacattgatccggagtggaaaatgaagacctttgttctgctaaccagagttttaaatgaa
gcccatactggtaaaaatattggcgcgttactgcgtgaagcctgcatggagtggaaaatc
tacgacaagaatcctgccatcgtcacagataacgccaggaatatgattgtggccagtgca
gaagcccagttcagtccacacattacctgcttcgcacatacactcaaccttgcctcgcag
aagggtttgggggtggaccgtgcttccaggttgttggggaaagtgcgaaaaattgttgga
tattttcaccgcagcccgattgcatgtcacgccctacaggaaaaacaaactctgatggat
ttaccaaaacataaactgatccaagacataatcaccagatggaacagttcattcgaaatg
cttgaacgttttttggaacaacagccagctataatggcaactctgatgtccaaggatcta
cgaaagggggtcacagatgtaggcacgctgagtgagagtgatattgccaacatggatgac
attgttcagttgatgggtcctgtcaaaatggcaaccactatgatgtgtgaagaagaccag
ccaactctctctgtaattgctcctcttcaagcaaaactgctgaaacacctacagccatgc
gaagacgactcaacccaggttgcagagattaagagggtgatggccagtgacctctccaca
cgctacagaggcacccaagatgctctcaacatagcatcagcgttggacccgcgatttaaa
gaactgccctacctggaaaaagaggacagagaacaggtctacacaaaactggtttttgag
gcagaagtgtcccaccagatgcaagcaatgggaaatcaggaggaagacgagggaagctca
agcacaaagctgtcaggattcaatgaagagaccacagctccaaatgagtcacctccttgt
aagaagaaagccttagatgcgctgtttggcgattccttcacccaaagagaaagaaaatcc
acaagcaagacagccagagcagaggtgttaaggtaccgagcaaaagatgcgttgcctttg
actgaaaatgccatgaagtggtggagatctcaggagaaagagctacctgtactttccacc
cttgctaaacggtacctgtgcattccaggcaccagtgtgccagcagaacgaatttttagt
actgctggcgacatagtgaacgcacagagaagtgttctgcggccagatcatgttgatgag
ttgatatttttgaaaaagaatctgtag
DBGET
integrated database retrieval system
