Coregonus clupeaformis (lake whitefish): 121541755
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Entry
121541755 CDS
T08357
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1B
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121541755
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121541755
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
HHH_3
T2SSK
CUE
Motif
Other DBs
NCBI-GeneID:
121541755
NCBI-ProteinID:
XP_041706971
LinkDB
All DBs
Position
27:complement(6184195..6195564)
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AA seq
949 aa
AA seq
DB search
MRNQRRFINHNTDSVNEDLTGQQTHETVVPETPELKRPPGPGSVRGMDSVVLDSDSDEEI
SGSSMMLSGKSLEKEPVMGAVIILSDEEGEVEMKTTLQRNGGQLPKNISGSQDPDRKRRL
EVCDSSQQSGTSNSSKKPALEEDSVTDDSEDEGPEPSWKSQEDMVRKLQTKFPRLVKEEL
REVLLEHDWHFEDTLEALRMFSEEGESSSQGDTQASSSASSAPQTSARQAAPAAKPPGRP
TSLPHKPTIGTVDKTINRPTKGADRRRRVIPEPGTSSEDEASDDFDESAEGMKLNSDDSG
SDQEVGTGSIVKGQILRFFQEASLDELSLISGCSVKKAQRIVELRPFNEWEDLVDALDRG
NGLSTDLVQGCRVVLRERDVVRSLMTKCEKITNKMMQDVTQVVERDKGSQKQPEILNSKY
QLKPYQLIGQNWLTLLHQNNLSGILADEMGLGKTIQAISFLASLYQEGNKGPHLLTVPAS
TLDNWVRELNLWCPRLKVLVYYGSVEDRKYLRYDILNKQVDYNIIISTYALTTSNDNDRS
LFRKLKLEYAVFDEGHMLKNMSSLRYRHLMAINAKYRLLLTGTPVQNNLLELMSLLNFIM
PNMFSSSTAQLANMFAMKSSEEQSSFEMERIAHAKLIMKPFILRRVKSEVLKQLPAKEEK
VEFCAMSDQQQQLYNTLMQKLKGSINGEKRELTNVMMQLRKMANHPLLHREHYTTTKLAA
MSQLMLKEPTHREADPALIKEDMEVMTDFELHRLCLQYPSVQDYQLNTDMLLDSGKLSLL
TQLLASLKNKGDRVVLFSQFTMMLDILEVFLKHLKHRYIRLDGSTPMSDRIVLIDQYNTE
LDIFVFLMSTKAGGLGINLASANVVILHDIDCNPYNDKQAEDRCHRVGQTRTVKVIKLIS
KDSIEDGMLRIGQKKLKLEQDMTASESQDGDEDSIPEDMASLLKASLGL
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgaggaatcaaagaagatttatcaaccataacacagactcagtgaatgaagatctcacg
gggcagcaaacgcatgagactgttgtcccggagaccccagagctcaaacgtcccccaggg
cctggatcagtgagaggcatggacagtgtggtactagactctgattcagatgaggagata
tcagggtcctccatgatgttgtcggggaagagtctggaaaaggaaccagttatgggtgct
gttatcatactgtcagatgaggagggagaggtggagatgaaaactactctacagagaaat
ggcggccagctccccaaaaacatatcgggaagtcaagacccagaccgtaagaggagacta
gaggtgtgtgacagctcccagcagagtgggacatccaactccagcaagaaaccagccctc
gaggaggattcagtgacagatgattctgaggatgagggtccagagcccagctggaagagc
caggaggacatggtgaggaaactgcagactaagtttccccgtctggtcaaggaggagctt
agagaagtgcttctcgagcatgattggcactttgaggacaccctagaagcactgcgcatg
ttttccgaggagggggagagttccagtcaaggggacactcaggcatcatcatcagctagt
tcagctccccaaacctcagcacgtcaggcagccccagcagccaaaccccctggtcgtccc
acatcactacctcacaagcctaccattgggaccgtagataagaccatcaataggccgact
aaaggagcagacagaaggaggagggtgattccagagccaggcaccagctctgaggacgag
gccagtgatgactttgatgagtctgctgagggcatgaagctgaactctgatgactcgggc
tcagatcaggaggttggaacagggtctattgtgaagggccagatcctcaggttcttccag
gaggcatcgctggacgagctgtctctcatctctggctgctctgtgaagaaggctcagagg
attgtcgagctgcgcccatttaacgagtgggaggatctggtggatgctctcgacagaggg
aacggcctgtccactgatctggtgcagggctgccgtgtggtcctgagagaacgggacgtc
gtgcgcagcctcatgaccaagtgtgagaaaatcaccaacaagatgatgcaggacgtgacc
caagtagtggagcgggacaagggttcccagaaacagccagagatcctcaacagcaaatac
cagttgaagccttatcagctcattggtcaaaattggctgaccctgctacatcagaacaac
ctgagtggaatccttgctgatgagatgggtttggggaagaccatccaggccatctcattc
ctggccagcctgtaccaggagggcaataagggcccacatctcctcactgtacctgcctcc
acactggataattgggtacgggagctgaatctgtggtgtcccaggctcaaagtcctggtg
tactatgggtctgtggaggatcgcaagtaccttcgatatgatattctcaacaaacaggtc
gactacaacatcatcatttccacgtacgctctcaccaccagcaatgacaacgaccgcagc
ctgttccgaaagctcaaactggagtatgccgtgttcgatgagggccacatgctgaagaac
atgagctcgctgcgctaccgccacctcatggccatcaacgccaagtaccgtctgctgctg
actgggaccccagtgcagaataacctcctggagctcatgtccctgctcaacttcatcatg
cccaatatgttctccagcagcactgcacagctcgccaatatgtttgccatgaaatcatca
gaggagcagagcagctttgagatggagaggattgctcatgccaaactcatcatgaaaccc
ttcatcctcagacgtgtcaagagtgaggtgctgaagcagctcccagccaaagaggagaag
gtggaattctgtgccatgagtgaccagcagcagcagctctacaacaccttaatgcagaag
ctcaagggatccatcaatggagagaagagagaactgaccaatgtgatgatgcagttgagg
aagatggcaaatcatccactgctgcaccgggagcattataccactaccaaactagctgct
atgagtcaactcatgctcaaggagccgacccaccgtgaagcagacccagcactgatcaag
gaggacatggaggtcatgacagactttgagctgcaccgactttgtctgcagtacccgtcc
gtacaagactatcagctgaacacagacatgctcctggactcaggaaaactcagcctgctc
acacagcttctggcctctctcaaaaacaagggggatagagtggtgctcttcagccagttc
accatgatgctggacattctagaggtgttcctgaagcacttgaagcatcgctacattcga
ttggatggatcaacgcccatgtctgacagaatcgtgctgattgaccaatacaacacagag
ttggacatctttgtgttcttgatgtctactaaggctggaggcctgggcatcaacctggcc
tcagccaatgtggtcatcttgcacgacattgactgcaacccctacaatgataagcaggcc
gaggatcgctgtcaccgtgtcggacagacaaggactgtgaaggtgatcaagctgatcagt
aaggactccatagaggacggcatgctccgcatcggtcagaagaaactcaaactggagcag
gatatgactgcctctgagtcccaggacggcgatgaggactcgataccagaggacatggcc
tcccttctgaaggcatcactggggctgtga
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