Coregonus clupeaformis (lake whitefish): 121541847
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Entry
121541847 CDS
T08357
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121541847
09122 Translation
03013 Nucleocytoplasmic transport
121541847
03015 mRNA surveillance pathway
121541847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121541847
03041 Spliceosome [BR:
cclu03041
]
121541847
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
121541847
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
Cap binding complex
121541847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AAA_11
AAA_13
Vfa1
GBP_C
EMC3_TMCO1
RRF
FapA
PIN_8
tRNA_bind_2
Dynein_AAA_lid
Afi1
Motif
Other DBs
NCBI-GeneID:
121541847
NCBI-ProteinID:
XP_041707114
LinkDB
All DBs
Position
3:complement(7926857..7938072)
Genome browser
AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGGQSHKRRRTSEPVEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYAVLSSLPWV
GKELYEKKDAEMDRLLNQIDGYLKRRLKTHVPMLQVWTAEKPHPQEEYLDCLFAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYVRLDTMNTTCIDRLLNWFSHH
LSNFQFRWSWDDWVDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSALIPAD
PIFFYKYQDEANSALPGYAVAIAVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKALTDCDEGKLHILRVVYEVWRNHPQM
VSVLVDKLIRTQIVDCAAVANWLFSPNMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIHQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaagacggcacagtgacggagatgatggtggccagtctcacaaaagaaggaga
acgtctgagccagttgagattgaggatcgcctggaatcactaatatgtcgagtgggagaa
aagagtacctcttccctggaaagtaacttggaaggtctcgcaggtgtattggaagcggac
ctccccaattacaaaaacaaaatcctgcgcatcttgtgtgctgtggctcgacttctaccc
gagaaactgactgtttacacaacactagtgggccttctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgatcagacaactcaaagagaccttgaaggccaacctg
tacaccgaagctctttacctggtgcgcttcctctgtgacctggtgaactgccacgtgatc
gctgccccctccatggtggccatgtttgagaactttgttagcgtcactcaggaggaggat
gtgccacaggtgcgttccgactggtttgtctatgctgtactctccagtctcccctgggtt
gggaaggagctttatgagaagaaggacgcggagatggaccggctcctaaaccagattgac
ggttatctcaagaggcgactgaagactcatgtccccatgcttcaggtttggacggcagag
aagccacacccacaagaggagtatctggactgtctgttcgctcagatccagaagctgaag
aaggaccgctggcaggagcgccacatcctgcggccatacatcgcctttgacagcgtgctg
tgcgaggccctgcagcacaacctgccacccttcaccccgcccgcccacatgcccgactgc
cagtaccccatgccccgcgtcatcttccgcatgttcgactacaccgatgcccccgagggt
cctgtcatgccaggcagccattctgtggagaggtttgtgattgaggataaccttcacaac
atcatcaagtcccactggaaagaaaggaagacctgtgctgcacagttgctaagctatcca
gggaaaaacaagatcccgctcaactatcacattgtggaggtgatctttggagagctcttc
cagctgccctgtcccccccacatcgacgtcatgtacaccacgctgctcatcgagctctgc
aagctgcagccaggctccctgccccaagttttggcccaagccacagagatgatgtacgtg
aggctggacaccatgaacactacttgcatagaccgactcctcaactggttctcccaccat
ctgagcaactttcagttccgatggagctgggacgactgggtggactgtttggcgctggat
gcagacaagcccaagcccaagtttgtcaaggaggttctggagaaatgcatgaggctctct
tatcatcagcggatagtggacatcgtccctcccactttctcagccctcatcccagctgac
cccatcttcttttacaaataccaagatgaggccaacagtgcgctgccaggctatgccgtg
gccatagcggtgggcaacgccatcaagaaccgggcctccaacgaggagatcctcaccgtg
ctcaaagacgtgccaaaccccaaccaggaagatgacgacgatgagggcgagggcttcaac
cccctgaagatagaggtgttcctgcagaccctcctccatctggctgccaagtccttcagc
cactccttcagtgccctggccaagttccatgagatcctgaaggccctgacggactgtgac
gagggcaagctgcatatcctccgggtggtctacgaggtctggaggaaccacccacagatg
gtctctgtgctggtggacaagttgatccgtacacagattgtggactgtgcagccgtagcc
aactggctcttctcccctaacatggctcatgagtttaccaggttttacgtgtgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggag
gaggccaaggataagctggagaggcaacagcataagaagcagaaggacagtggagacgag
gaagacatggagaagaacagtgaggatgaggatggtcagctggaggagcagatcgagcgt
ctgcaggagaaggtggagtcggcccagagtgagcagaagaacctcttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacaggcagtgtggac
ttcagcacgccctggtacaagaactgcatcgagaggctgcagcaaatcttcctcatgcac
catgtgacaatccaccagtacatggggaccctggagaacctgctattcaccgccgagctc
gaccaccacatcctagctgtgtaccagcagttctgtgcccttcagctctga
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