Coregonus clupeaformis (lake whitefish): 121541882
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Entry
121541882 CDS
T08357
Name
(RefSeq) WD40 repeat-containing protein SMU1
KO
K13111
WD40 repeat-containing protein SMU1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121541882
Spliceosome [BR:
cclu03041
]
Complex B
Other components
Complex B specific factors
121541882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_EML
ANAPC4_WD40
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
LisH_TPL
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_ACSF4
Beta-prop_RIG_2nd
Ge1_WD40
Beta-prop_TEP1_C
Beta-prop_Nup120_160
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_Aladin
Beta-prop_Vps41
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_BBS7
Beta-prop_EIPR1
Beta-prop_WDR75_2nd
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_IP5PC_F
VPS8_N
DUF7165
LisH_PAC1
PROPPIN
Beta-prop_NOL10_N
LisH
zf_topless
LisH_WDR26
Motif
Other DBs
NCBI-GeneID:
121541882
NCBI-ProteinID:
XP_041707182
LinkDB
All DBs
Position
3:22121244..22125745
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AA seq
513 aa
AA seq
DB search
MSLEVESADVIRLIMQYLKENNLHRTLTTLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRVAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLTRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFCKDSSQLLSASFDQTIRVHGLKSGKSLKEFRGHSSFVNEATFTPD
GHHIISASSDGTVKVWNMKTTECTNTFKSLGTSAGTDITVNNVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLISTYSEDGLLKLWKP
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggaggtggaatcagcagacgtgattcgtctgataatgcagtacctgaaagag
aacaatctgcaccggacattgaccaccctgcaggaagagaccaccgtgtctttgaacact
gtggacagtatcgagagttttgtggcagacatcaacagtggccattgggatactgtgctg
caagctatccagtccctcaagctccctgacaagactttgatagacttgtatgaacaggtg
gtgttggagctcattgagttgagagagttgggagcagccaggtctttgctaaggcaaaca
gaccccatgatcatgctgaagcagacgcaaccagagaggtacattcacctggagaacctg
ctggctcgttcctactttgaccccagagaggcctacccagacggcagcagtaaggagaag
cgacgcgtggccatcgcccaggccctggccggggaggtcagcgtggtgcccccctcccgt
ctcatggccctgctgggacagtccctaaaatggcagcagcaccagggtctcctgccccca
ggtatgaccattgacctgttcaggggcaaggcagccgtgaaggacgtggaggaggagcgc
ttcccaacacagctcactagacatatcaagtttgggcagaagtcccacgtggagtgttcc
cgcttctcccctgatggtcagtacttggtcacaggatcagtggatggtttcatcgaggtc
tggaacttcaccactggcaaaatcagaaaggatctgaagtaccaggcgcaggataacttc
atgatgatggacgatgcagtgctttgtatgtgcttcagtagggacacagagatgctggcc
acaggggcccaggatggcaaaataaaggtgtggaagatccagagtggtcagtgcttgcgg
cgctttgagcgtgcccacagtaaaggtgtcacctgcctcagtttctgcaaggacagcagc
cagctgctcagtgcctcctttgaccagaccatcagggttcacggattgaagtcgggcaag
tcgctgaaagagttccgcggacactcctcttttgttaatgaagcaacattcacacctgat
ggccaccatatcatcagcgcttcctctgacggcactgtgaaggtgtggaacatgaagacc
acagaatgcaccaacaccttcaagtccctgggcacctcggccggcaccgacatcacagtc
aacaacgtcatcctgctgcccaagaacccagagcactttgtggtgtgcaaccgctccaac
accgttgtcatcatgaacatgcagggccagattgtgaggagtttcagctctggtaagagg
gagggaggagactttgtctgctgtacgctgtctccccgtggcgagtggatctactgtgta
ggagaggactttgtgctctactgctttagcacagtcactggcaagctggagagaaccctg
acagtccatgagaaggatgtgattggcatcgcccatcacccccaccagaacctcatctcc
acgtacagtgaggatggcctactcaagctctggaaaccctga
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