Coregonus clupeaformis (lake whitefish): 121541888
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Entry
121541888 CDS
T08357
Name
(RefSeq) TBC1 domain family member 2A isoform X1
KO
K20165
TBC1 domain family member 2A
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121541888
Membrane trafficking [BR:
cclu04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
121541888
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
PH
PH_11
PH_alsin
PH_8
PH_3
Motif
Other DBs
NCBI-GeneID:
121541888
NCBI-ProteinID:
XP_041707195
LinkDB
All DBs
Position
3:22143855..22176537
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AA seq
992 aa
AA seq
DB search
MEGEDPEGNPSTASSHSLPPQAEAVSPADEDDCITTRGNSEETAKHTNSMGQPSQDHQSE
GVPAKTAATDNNQSQSATTMDNQVQQQPTESLSNTKLCGYLLKQGGPMKSWKSRWFTYEE
KKSQLFYYRMAQDVTSLGKIELCSATFGYPLQGEHGTFHIQTPERTFVLKADNQEAMMYW
LQQLQLKRWQHRDQLTGESTRHCTDHQRPEGQGELPTSCPDYFLPTMKTPPGLLGEEAAN
LPAPVQRAPLSNFSLKHPLIEIQNSMHSLFYKRSSQELSRSVFHLEAPPPWTPPNPSKTP
SQTAQDRLGPRTPVDPPTPTTPLLLADHAGECSPGEGRLFPCPSPKSRGKTRGSSATMPT
VLREAATDKTTRLQQEKHMLAEEVKAQKELVWLLHKALEAAQLEKRTCTEFLAAECEQER
LELLRHRERHAADLQCRLEELKAKEEGLRKSLAQRDAHVAELQENVTLMMAKNHAKQEVI
LKLSEQVAACMTDPRRTVSTTNGLEVQTFHQLQEDTENLKDDIEAYKIQNKFLNSEIYQL
TKLWRNSSEQEKSLMVKCAYLEARNCQIESHYLGVLRKLQESKALEPGQHEAVRNLIEDA
LQGDLNDILKLNPVREHDEYGFKIIPDYEVEDMKLLAKIQDLEIRSHNLLRQEAGVRPLL
DRWAQYLGGRLADDLYPSQELKFLLRCGVPREYRPQVWRWVVRARTRSLRERHPDRYEQL
CQKSLTSPHQASRQIQLDLHRTLTTNQRFSSPSSPALQQLQRILLAFSWQNPTIGYCQGL
NRLAAIALLVLESEEDAFWCLVAVVEVIMPHDYYTKTLIASQVDQRVLKDFMAEKMPRLT
AHFEEHSVDVSLITFNWFLVVFVESLPSDILLRVWDAFLYEGTKVIFRYALALFKYKEEE
ILNIHDNVEIYQYLRFFTKTISDGRKLTNIAFSDMNPFPMKLLRNRRALHLECLQGELRE
LEAQQREFVTESAERKDKDLDTILVSEDDEEL
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggacccagaaggaaatcccagcactgcctcatcccactcacttcctccc
caagcagaggcggtaagcccagcggatgaggatgattgtatcacaacacgggggaactct
gaagagaccgctaaacacacaaacagcatgggccagccgagtcaggaccaccagagtgaa
ggggtcccagctaagactgctgccacagacaacaaccagagtcagtccgccaccaccatg
gacaaccaagtccagcaacaacccacggaaagcctgtctaacactaaactctgtgggtac
ctccttaaacaaggaggtcccatgaagtcgtggaagtcgcgctggttcacatacgaggag
aagaagagccagttgttttactacaggatggcgcaggatgtgacctctttggggaagatt
gagctgtgcagcgccacgtttggataccccctccaaggagagcatggcacctttcacatc
cagacccccgaacggaccttcgtcctcaaggcagataaccaggaggccatgatgtactgg
ctacaacagctgcagctgaagagatggcagcaccgagaccagctaacaggagaatccaca
cgtcactgcactgaccaccagagaccagagggacagggggaattacccaccagctgccca
gattacttcctgccaacgatgaagaccccgccaggcctcttgggcgaggaggccgccaat
ctgcctgcgccggtacaacgggcccccctaagcaacttctccctcaaacaccctctgata
gagattcagaactcaatgcacagtcttttttacaagcggtcctcccaggaactgagtcgg
agtgtgttccatttggaggcgcctcctccctggaccccaccaaatccctcaaagaccccc
tcccagacagcccaggacaggcttggccctaggactcccgttgaccccccgacccctacc
accccgctgctgttggcggaccacgcgggcgagtgctcccctggggagggcaggttgttc
ccatgcccatccccgaagagcagagggaagacgaggggcagctctgccaccatgcccact
gtgctacgggaagctgctacagacaagacgacccgcctccagcaggagaaacacatgctg
gctgaggaggtcaaggctcagaaggagctggtgtggcttctccacaaggccctggaggcg
gctcagctagagaagcggacctgcaccgagttcctggcagccgagtgcgagcaggagcgt
ctggagctgttgaggcaccgcgagcgccacgccgctgacctgcagtgtcgtctggaggag
ctgaaggccaaggaggagggcctgaggaagagcttggcccaaagggacgcccacgtggcc
gagctgcaggaaaacgtcaccctgatgatggcgaagaaccacgccaaacaggaggtgatc
ctgaagctgtcagagcaggtggcagcctgcatgaccgaccctagacgcaccgtgtccacc
accaatggcctggaggtccagaccttccaccagctgcaggaggacactgagaacctcaag
gatgacattgaggcctacaagatccagaacaagtttctgaactctgagatctaccagctg
accaagctatggcgcaacagttcagagcaggagaaaagccttatggtgaagtgtgcctac
ctggaggcccgtaactgtcagatagagagtcattacctgggtgtactgaggaagctgcag
gagagcaaggctctagaaccgggccagcatgaggctgtgaggaacctcatagaggacgca
ctacagggagacctgaacgacatcctcaaactcaaccctgtcagggagcacgacgagtac
ggcttcaagatcattccggactacgaggtggaggacatgaagctgctggccaagatccaa
gacctggagatccgctcccacaatctgctgaggcaggaggccggggtcagacccctgttg
gaccgctgggctcagtatctgggcggccgcctggccgacgatctctacccctcccaggag
ctcaaattcctgctgcggtgtggcgtgccgcgggagtaccgcccgcaggtgtggcgctgg
gtggtgagggcccgcacacgctcgctgagggagcgccacccggatcgctatgagcagctg
tgccagaagagccttacgtctccccaccaggcctccagacagatccagttggacctgcac
cgcacgctaaccaccaatcagcgcttttcctcaccctccagccccgccctgcagcagcta
caacgaattctgctagccttctcctggcaaaaccccaccatcggctactgtcagggcctc
aacaggctggcagccatagctctcctggtgctggagagtgaggaggatgccttctggtgt
ctagtagctgtggtggaggtcatcatgccccacgactactacaccaaaacactcatagcc
tcgcaggtggaccagcgtgtgctgaaggacttcatggcggagaaaatgccccggctgact
gcccactttgaggagcatagtgtggacgtgtccctcatcaccttcaactggttcctggtg
gtgttcgtggagagcctgcccagcgacatcctcctgcgggtgtgggacgccttcctctac
gagggcaccaaggtgatatttcggtatgccctggctctgttcaagtacaaagaggaggag
atcttgaacattcatgacaacgtggagatctaccaatacctgcgcttcttcaccaagacc
atctctgatggcaggaagctgaccaacattgccttcagcgacatgaacccgttccccatg
aagctgttgaggaaccggcgtgcactgcatctggagtgcctgcagggggagctcagagag
ctggaggcccagcagagggagtttgtcaccgagagcgccgagcgtaaggacaaggacctg
gacactatactggtcagcgaggacgatgaggagctgtag
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