Coregonus clupeaformis (lake whitefish): 121541916
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Entry
121541916 CDS
T08357
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121541916
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121541916
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121541916
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
121541916
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
121541916
NCBI-ProteinID:
XP_045063477
LinkDB
All DBs
Position
3:22210970..22260301
Genome browser
AA seq
2301 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLFIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKGLIQALKTLQANTKGFKLKDFLHNNETLSTFLLRNASFSEHAVHQIIEADVNLE
KVLVKGFGVRLRDLCSSNSNGISVEDFVTITDSEVSSLVQKVLCRSPGSWLNQAESHFFH
NLDFLKPIRKDVRADPEAVQQVAEATDNLLESLGSLAVELASMKSWRDLRNEIIFLTENA
TSSPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHNTTDGEEPISAYDNTS
TPYCNAMMRNMESSPMSRMIWQALKPLLMGKILYTPDTPATQKIIHEVNRTFQELGVLRE
LGGMWEEIKPKVWDFMESSEHMDLVRTLLKNNGTASFFTSQLAGTEWTVEDVSNFLTKHS
QDTRPHGTAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKF
WAGIVFPDIEANSSELPANVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGG
FSYLQDIIEHSIITVVTGVKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSV
AIIIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVVLLKMGNLLPY
SDPGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVG
FGAKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFNSPMEEDDFSLTTAIIMMYFDS
FLYMVMTWYIESVFPGQYGIPRPWYFLFSKSYWFGEGDNRKTDFSQNKRRNCEAVCIEEE
PAHLKPGVFIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFP
PTSGTAYILGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSE
IEQILIDTGLLHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIW
DLLLQYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVK
KCPEPFLSSCRNSSSTVSFTKKEEDCPSESSSDAGLGSEHESEVATIETAQAASNCESAF
VPPDVSLISSLIFKHVPAARMVENLGHELIYVLPYGAAKDGAFVELFKDMDSRLPDLGIS
SYGVSDTTLEEIFLKVAEDNGVDTEVPSDGTLPVRRRRRNHAFGGGNAFGGDHQSCLRPQ
IDDDNNEHNDSDADPESRETDLLSGSDGKGSYQVKGWGLKRQQFVALIWKRFLYAQRSRK
GFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDASTQQLL
SALTEGPGFGTRCMEGQPIPDTPCTMGDEDWSIPEVPETILELFRTGNWTMEEPSPACAC
SCEGRKKMLPECPAGAGGLPPSQMKISETDTLQNLTGRNISDYLVKTYAEIIGKSLKNKI
WVNEFRYGGFSLGARSTHVLPPADEIDDAIARVRKIFKLEKGAAADRFLESLSSFINGLD
TKNNVKIWFNNKGWHSMGAFLNVMNNGILRANLPPGKDPSKFGIRAFNHPLNLTKEQLSQ
VALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIW
DMCNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPST
AYVVLTSVNILIGINGSISTFVMELFGDNEIGGINNILKNVLLIFPHFCLGRGLIDMVKN
QAMADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLFQYRFCIKPINLHTKL
PPVGEEDEDVARERQRIVNGLGQGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLL
GVNGAGKTTTFKMLTGDSIVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLTGRE
HLEFYAILRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPPV
VFLDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCL
GSVQHLKNRFGDGYTIILRVAGADPDLPPVIKFIESELPGSTLKEKHRNMLQYQLPSSLT
SLAHIFRILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEAVVDIT
PLSSRQAEEKLAEERLKESLV
NT seq
6906 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgttgttgtggaagaactttacctacaggagaagg
caaacgctccaactgctgattgagatagtatggcccctgttcatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgaatgtcatttccccaacaaggcc
atgccctcggcgggcaccctgccctggatccaaggcatcatctgcaatgccaacaacccc
tgcttccgcaaccccactcctggagagtccccgggggtcgtgggtaacttcaacgagtcc
ataatctctcgtctgttctcagatgccaagaagatcctgctgtacagtcagaatgaccgg
aatctggacggctttaaaggcctaatccaggccctgaagacactacaggccaacaccaaa
ggattcaagctgaaggatttcctccacaacaatgagaccctgtccacattccttctgcga
aacgcctccttctcggaacacgccgtgcaccagatcattgaggccgatgtgaacttggaa
aaggtgctggtcaaaggcttcggtgtccgtctgagggacttgtgcagcagcaacagcaac
ggcatcagtgtggaggactttgtgaccatcacagacagcgaggtgtccagtctggtccag
aaggtcctttgcaggtccccaggctcctggctgaaccaggcagaaagccacttcttccac
aacctggacttcctcaaacccatacggaaagatgtgagggctgaccctgaagccgtccaa
caggtggccgaggctacagacaacctcctggagagcttgggctcgctggccgttgagctg
gccagcatgaagagttggagagacctgcgtaacgagatcatcttcctcactgagaacgcc
acatcctcccccagccacatgtaccaggccgtgtcgcgcatcgtctgcggccaccccgag
ggtggcggactaaagatcaagtccctcaactggtacgaggacaacaactacaaggccctg
tttggcaaccacaacacaactgacggggaggagcccatctctgcctatgacaacacatcc
acgccatactgtaacgctatgatgaggaacatggagtccagccccatgtccaggatgatc
tggcaggccctgaagcctctgctcatgggcaagatcctgtacacccctgacacccccgcc
acacagaagatcatccacgaggtgaacagaacattccaggagctgggggtcctcagagag
ctggggggcatgtgggaggaaattaagcccaaggtctgggacttcatggagagcagcgaa
cacatggacctagtaaggaccctactgaagaacaatggcactgccagcttcttcacctcc
caactggcgggcacagagtggactgtggaggacgtctccaacttcctgactaaacattcg
caggacacgcgccctcacggcaccgccttcacctggagggaagtcttcaacgagacggac
caggccatcatgagcatatcccgcttcatggagtgtgtaaacctggataagatggagccc
gtggccaatgaggaaaggatggtcaacaaatccatggcgctcctggacgataggaagttc
tgggcggggattgtgtttcccgacattgaggccaacagctctgaactgccagccaatgtc
aactacaagatccgcatggacatcgataatgtggagcgcaccaacaagatcaaagatgga
tattgggaccccggtcctcgtgccgacccctttgaggacctgcgctacatctggggcggc
ttctcttacctccaggacatcatcgagcacagcatcatcacagtagtgactggcgttaag
gagaagacgggagtctacatccaacagatgccctacccctgctacgtggatgacatcttc
ctgcgggtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtg
gccatcatcatcaagagcgtggtgtacgagaaggaggcgaggctgaaggagaccatgagg
atcatgggattggacaacggcatcttgtggttcagctggttcatcagcagcctcatcccc
ctgctcatttctgccggcctgctggtggtgctgctcaagatggggaacctgctgccctac
agtgaccccggcgtcatcttcctgttcctgggttccttcgctgtggtaaccatcatgcag
tgcttcctcatcagcacaatgtttgcccgtgccaacctggcggcggcatgtggtggcatc
atctacttcaccctctacctgccctatgtcctctgtgtggcctggcaggactacgtgggc
tttggggccaaaattgtcgctagcctgctgtccccagtggcctttggctttggctgtgag
tactttgccctgttcgaagagcagggcatcggcatccagtggaacaacctgttcaacagc
cccatggaggaggatgacttcagcctgaccaccgccatcatcatgatgtacttcgactcc
ttcctctacatggtgatgacctggtacatcgagtccgtcttccctggtcagtatggtatt
cccaggccctggtacttcctgttctccaagtcctactggtttggagaaggagacaacagg
aagactgacttcagtcagaacaagagaaggaactgtgaagctgtctgtatagaggaagaa
ccagcccacctgaaacctggcgtcttcatagagaacctagtcaaggtgtaccggcacggg
aagaagctggctgtggacgggctgactctgggcttctacgagggacagatcacctctttc
ttgggccacaacggagcagggaaaaccaccaccatgtcgattctaacgggactgtttccc
cctacctctggcactgcttacatcctgggcaaagacatccgatcagagctgagtgctatt
cgacagagtctgggcgtttgtccacagcacaacgttctcttcagcatgctgaccgtcgag
gagcacatctggttctacgctcgtctgaagggtctatctgaggaacaggtgaagtctgag
atcgaacagatcctgatagacactggcctgctgcacaaacgcacttccaggaccagcaca
ctgtccggagggatgcagaggaagctctctgtggctctggcctttgtcggagggtcaaag
gttgtgattctggatgagcccactgccggggtcgacccctatgcccgcaggggcatctgg
gaccttttgctccaataccgtcaaggtcgtaccatcatcctctccacccaccacatggac
gaggcggacatcttgggcgaccgcatcgccatcatctcccacggcaagctgtgctgcgtg
ggctcctccctcttcctgaagaaccagctgggtacaggctactacctcaccctggtcaag
aagtgcccagaacctttcctcagctcctgccgcaactcctccagcaccgtctccttcacc
aagaaggaggaggattgtccctctgagagcagctccgacgcaggccttggcagcgaacac
gagagtgaagtagctaccatagaaactgctcaggcagcttccaactgcgaaagtgccttc
gtgccccccgatgtctccctgatctccagcctgatcttcaagcacgtcccggccgcccgc
atggtggaaaaccttggccacgagctcatctatgtcctgccctacggcgccgccaaggac
ggagccttcgtagagctcttcaaggacatggacagtcgcctccctgacctgggcatatcc
agctatggtgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaac
ggagttgacactgaagttccctcagacggtaccctccctgtgcgcagacgtcgtagaaat
catgcctttggtggaggaaatgccttcggtggagaccaccagagctgccttagaccccag
attgacgacgacaacaatgaacataacgactcagacgcagacccagaatccagagagaca
gacttattgagcggctcagatggtaaaggatcctaccaggtgaagggctggggtttgaag
aggcagcaatttgtggccttgatttggaagaggtttctgtacgctcaacgctccagaaaa
ggtttctttgctcagattgtactccctgccgtgtttgtgtgcattgccctggtcttcagt
ctcatcgtcccaccatttggaaaataccccagtctggagctgcagccatggatgtacgaa
gaacagtccctcttcatcagtgatgacgcccctgaagatgctagcacacaacagttattg
agtgccctcaccgaaggacctgggtttggaacgcgctgcatggaaggacagcccatacct
gacactccctgtacgatgggtgacgaggactggtccataccggaggtcccggagaccatt
ctggaactgttccgcacaggtaactggaccatggaggagccgtcccccgcatgcgcctgc
agctgtgaaggccgcaagaaaatgctccctgagtgtcctgctggagccggaggactgcca
ccctcccagatgaagatcagcgagacagacaccctgcaaaacctgaccggcagaaacatc
tctgactacctggtgaagacctatgcagagatcattgggaaaagtttgaagaacaagatc
tgggtaaatgaatttaggtatggtggcttctcattgggtgccaggagcacccacgtcctc
cccccagctgatgaaattgacgacgccatcgctcgagtgaggaagattttcaaattggag
aagggtgcagccgcagaccgattcctggagagcttgtctagcttcatcaatggtctggac
accaagaacaatgtcaagatttggttcaacaacaaggggtggcacagcatgggagccttc
ctcaacgtgatgaacaacggcatcctgcgcgccaacctgccccctggcaaggaccccagc
aagtttggcatccgcgccttcaaccacccgctcaacctcaccaaggagcagctgtcccag
gtggcactgatgaccacctcagtggacgtcctggtgtccatctgcgtgatcttcgccatg
tccttcgtcccagccagcttcgtagtcttcctcatccaggagagagtgagcaaggccaag
cacatgcagttcatcagcggcgtgcagcccctgctctactggactgccaacttcatctgg
gatatgtgtaactacatcgtcccggcgacactcgtcatcatcatcttcgtctgcttccaa
caaaaggcctacgtgtcgtccaccaacctgccagtgctggccctgctgttgcttctctat
gggtggtctatcactcccctgatgtacccggcgtccttcttctttaagatccccagcaca
gcctacgtggtgctcacctccgtcaacatcctcatcggcatcaacggcagcatctccacc
tttgtcatggagctcttcggagacaacgagattgggggtatcaacaacatcctgaagaac
gttttgctgatcttccctcacttctgtcttggccgaggcctcatcgacatggtgaagaac
caggccatggccgatgctctggagagatttggtgagaaccgcttccgatcccctctggag
tgggacatggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatc
atcaccgtccttttccagtaccgcttctgcatcaagcccattaacctgcacaccaagctc
cctccggtgggcgaggaggacgaggacgtggccagagagaggcagaggatcgtcaacgga
ctgggacaaggagacatcctggagctccgacagctcaccaaggtctacaagaggaagcag
aagccggctgtagaccgtctgtgtgtgggcatccctcctggagagtgctttggcctcctg
ggtgtgaacggagctggaaagaccaccaccttcaaaatgctgacaggagactccatagtc
accagtggagaagctttcctggctggaaaaagtatactgcgggagatagacgaagtgcac
cagaacatgggctactgcccccagtttgacgccatcaacgaactgctgacaggcagagag
cacctggagttctacgccatcttgcgtggcgtgcccgagaaggaagtgtgcgaggttgct
gaatggggcatccgtaaactgggcctagtaaagtatgtggacaaggcagcaggaagctac
agtggaggaaacatgaggaaactctccacggccatggccctgataggaggaccacctgtt
gtgttcctggacgagcccactactgggatggaccccaaagcacgcagggccttatggaac
tgcatccacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggag
gaatgtgaggccctgtgcaccagaatggccatcatggtcaacggcagattccgctgcttg
gggagcgttcagcacctaaagaacaggttcggagacgggtacaccatcatcctgcgtgtg
gcgggggcggaccctgacctgccgccagtgattaagttcattgagagcgagctgccgggc
agcacccttaaggagaagcacaggaacatgctgcagtaccagctgccctcctctctcacc
tccctggcacacatcttcaggatcctggccaagaacaaggacctgctccggatagaggac
tactctgtgtcgcagaccacactggaccaggtgtttgtgaactttgccaaggaccagagt
gacgattaccactcaaaagacaattcagttaagcgcaaagaggcagtggtggacattacc
ccgctcagctcgcggcaggctgaagagaagctagccgaggagaggctaaaggagagcttg
gtgtga
DBGET
integrated database retrieval system
