Coregonus clupeaformis (lake whitefish): 121541946
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Entry
121541946 CDS
T08357
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121541946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121541946
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121541946
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
121541946
NCBI-ProteinID:
XP_041707282
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Position
27:complement(38569193..38599595)
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AA seq
531 aa
AA seq
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MATEFTISESAVPLSEPHQVEDEEHWLYGGENTKKQNAPEGLPGPADSLQLTSMGNTEEK
DAASQEAKGTEGDEEEDSDSDDDDDVKVTIGNIKTGAPSYIGTGMNLSLKPARGYVSAAA
IKLQPKGIDIETLGAFNGAPVVEVEMDIFEDKPWRKPGADLSDYFNYGFNEETWKGYCER
QRRLQLGLEPSASLSFQNKITVQQGRVTTLEKDTEPSSIKPDYKPDFPPASVLALAANRL
KAGPPPNRKLGGTIDVIGGQTGAIRRVEGRRREMQEQNPIQVLGDHGNKIQPLVPPAGPP
PPLPLPMGMPPPHFLHPPPPVSGMPPPLHPPGIPPPSITGLFPPPLAPPPTLMMPPVDSS
RAPLPFGYNSGEPSFINYPPVSSSHMPWGSVLEKGGGEDGGRGHWEYQGGHRERDRERDQ
ERDHTPTTSEYNEDDRYHYYSHDRESEREFERSYLHVHDSSGERSREREEHQRDRRHRDK
EESGKHKSSKRKQHDDEGEVHRRHKHKKSKRSKEDKDDPEDMVGRGEEHKD
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggctactgagttcaccatttcagaatcagcagtcccgttgagtgagccccatcaggtt
gaagacgaagaacattggctgtatgggggggaaaacaccaagaaacaaaatgctcccgag
ggtttgcctgggcctgctgactcccttcagctgacttcaatgggcaatacagaggagaag
gatgctgcatcacaggaagccaaaggtactgaaggtgatgaggaggaggacagtgacagt
gatgacgatgatgacgtcaaggtcaccattggtaacatcaaaactggtgcaccttcctac
attggaacgggcatgaacctgagcttgaaaccagctcgtggctatgtctcagcagcagcc
attaagctgcagcccaaagggatagatatagagacattaggggccttcaatggtgcacca
gttgtggaggtggaaatggacatatttgaggacaaaccgtggagaaagccaggtgccgac
ctctcagactacttcaactatggttttaatgaggaaacgtggaaggggtactgtgagaga
cagcgcagactacagcttggcctggagcccagtgcttctctcagttttcaaaacaagata
acagttcagcagggaagggtaaccactttagaaaaggatacagaaccgtcttccatcaag
cctgattacaagccagactttccccctgcttcagtcctggccctcgccgccaacagacta
aaggcaggacccccacctaacaggaaattgggtggaactattgatgtgattggtggacag
acaggagccattcgccgggttgaaggtcgaaggagggaaatgcaggaacagaatcccatc
caggtgcttggagaccatggtaacaagatacaacccttggttccaccagcaggacctccc
cctcctcttcctcttccaatgggtatgccccccccacacttcctgcatcctcctccacca
gtatctggtatgcccccacctcttcaccccccaggtatacccccaccttccattacaggc
ctgttcccacctccccttgctcctccccctaccttgatgatgccaccagtggatagcagt
agagcccctcttcctttcggatacaacagtggagagccaagcttcattaactaccctcca
gtctcatcatcacacatgccgtggggctctgtgctggagaaggggggtggggaagacgga
gggcgagggcattgggagtaccaaggaggtcatagagaaagagacagagagagggatcaa
gagagagatcatactccaaccaccagcgaatataatgaggatgaccgttaccactactac
agccatgatcgagagagtgagcgagaatttgagcgcagttaccttcatgttcacgacagc
agcggtgaacgtagcagggagagggaggagcatcagcgagacagacgccatcgtgacaag
gaggagagtggtaaacacaagtcttccaaacgcaagcagcatgatgatgagggggaggtg
catcgcagacacaagcacaagaaaagcaaacgcagtaaagaggacaaggatgacccagag
gatatggtggggcgtggggaagagcacaaggactga
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