Coregonus clupeaformis (lake whitefish): 121541972
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Entry
121541972 CDS
T08357
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03020
RNA polymerase
cclu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121541972
09124 Replication and repair
03420 Nucleotide excision repair
121541972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121541972
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121541972
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121541972
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121541972
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121541972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
121541972
NCBI-ProteinID:
XP_041707321
LinkDB
All DBs
Position
3:22326642..22335414
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPETDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagatgaagatatccaatacgacgaggatgaggatgaaatcacccccgat
ttatggcaggaagcttgctggattgttatcagttcctactttgatgagaagggtctggta
cgacagcagctggactcctttgacgagttcatccagatgtccgtgcagaggattgtggag
gatgctccgcccattgacctgcaggctgaggcccagcacacctctggagaggtggaggac
ccgccacgctacctgctaaagtttgaacagatctacctttccaaacccactcactgggaa
agagatggagcaccctcccctatgatgcccaacgaagccagactccggaacctcacgtac
tctgctccgctgtacgtggacatcaccaagaccatcatcaaggagggtgaggaccagctg
cagacccagcaccagaagaccttcatcggcaagatccctatcatgctgcgctccacctac
tgcctgctcagtggcctaacggaccgtgatctctgtgagctcaacgagtgcccgctagat
cctgggggctacttcatcatcaacggctctgagaaggtcctgattgcccaagaaaagatg
gcgacgaacacagtgtatgtctttgccaagaaggactcaaagtacgcgtacacaggggag
tgccgctcctgcctggagaactcctcgcgccccaccagctccatctgggtcagcatgatg
gccaggggaggacagggggttaagaaaagtgccattggtcagaggatcgtgtccactctg
ccctacatcagacaggaggtgcccatcatcatagtgttccgagccttgggctttgtgtcc
gacagagacatcctggagcacataatctacgactttgacgaccctgagatgatggagatg
gtcaagccctccctggacgaggcctttgtgatccaggagcagaacgtggccctgaacttc
atcggctctcgtggtgctaagcccggtgtcaccaaagagaggaggatcaagtacgccaag
gaggtgctgcagaaggaggtgctcccccacgtcggagtcagtgacttctgtgagaccaaa
aaggcctatttcttagggtacatggtccacagactgctattggctgccctgggcagaaga
gagctggatgacagggatcactacggcaacaaaagattggacctggctgggcctctgttg
gctttcctgttccgtggaatgttcaagaacctgctgaaagagatccgcatatacgcccag
aagttcattgacagagggaaagacttcaacctggagttggccatcaagacgcgcatcatc
tccgatggcctgaagtactctctggccacggggaactggggtgacgtcaagaaggcccat
caggccagagctggagtgtcccaggtgttgaaccgcttgacctttgcctcaaccctctcc
catcttcgacgggtgaactcccccatcggtcgagatggcaagctagccaagcccaggcag
cttcacaacacactgtggggcatggtgtgccctgccgagacccccgagggtcatgctgta
ggcctggtgaagaacctggccctcatggcctacatctctgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcaccggcagcc
atcgcagatgccacaaagatctttgtgaatggctgctgggtgggtatacacaaggaccca
gagcagctgatgaacacactgaggaaactgagaaggcagatggacatcattgtgtctgag
gtgtccatgatcagagacatccgagagagggagatccgcatctacacagacgcagggagg
atctgtcgtcctctgctgatcgtagagaaacagaagctgctgctgaagaggagacacatt
gaccagctgaaggagagggagtacaacaactacagttggcaggacctggtggccagcggc
gtggtggagtacatcgacaccctggaggaggagactgtgatgctggccatgacccctgac
gacctccaggagaagggcgtggcctactgttctacatacagccactgtgagatccacccc
tccatgatcctgggagtctgtgcctccatcatccccttccccgatcacaaccagtctccc
agaaacacgtaccagtctgctatgggtaaacaagccatgggtgtgtacatcaccaacttc
catgtgcggatggacaccctggcccatgtgctctactacccccagaaacccttagtcacc
acccgctctatggagtacctgcgtttcagagagcttccagcaggtatcaattctattgta
gctattgcggcgtacactggctacaaccaggaggactctgtcatcatgaaccgctctgcg
gtggaccgtggattcttcaggtctgtgttctaccgctcctacaaagaacaagagtcaaag
aaaggttttgatcaggaggaagtctttgaaaaacccacacgcgaaacatgttcgggtatg
aggcacgccatttacgacaagctggacgacgacggcttgatagctcccggtgtgcgtgtc
tccggcgaggacgtgatcatcggcaagacagtgaccctgccggagaccgacgacgagctg
gacagcaccaaccgccgctacaccaagagggactgcagcaccttcctccgcaccagcgag
acgggcatcgtggaccaagtcatggtcaccctcaaccaggagggctacaagttctgcaag
atcagggttcgctctgttcgtatcccccagattggtgacaagtttgccagtcgacacggg
cagaagggtacctgtggtattcagtacagacaggaggacatgcccttcacttgcgaggga
attaccccagacatcatcatcaacccccacgccatcccctctcgtatgacagtcggccat
ttgatcgagtgcctgcagggcaaggtttcagccaacaaaggagagattggtgacgccacg
cctttcaacgatgcggtcaacgtgcagaaagtctccaacctgctgtctgaatacggctat
cacctgagaggcaacgaggtgttgtacaacggtttcaccggccgtaagattacctctcag
atcttcctcgggcccacatactaccaacgcctgaagcacatggtggacgacaagatccac
tctcgggcccgaggcccagtccagatcctcaacagacagcccatggagggcagatcacgt
gatggaggtcttcgttttggggagatggagcgtgattgtcagatagcccacggcgcggct
cagttcctgcgtgagaggctgttcgaggcatctgacccctaccaggtccacgtctgcaac
ctctgtggcctcatggccatcgccaacacccgcacacacacctacgagtgcaggggctgt
cgcaacaaaacacagatctctctggtcagaatgccgtatgcctgcaagctgctcttccag
gagctcatgtccatgagcatcgcccctcgcatgatgaccagttag
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integrated database retrieval system
