Coregonus clupeaformis (lake whitefish): 121541994
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Entry
121541994 CDS
T08357
Symbol
supt6h
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121541994 (supt6h)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121541994 (supt6h)
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121541994 (supt6h)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
121541994 (supt6h)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
S1
Spt6_S1
S1_RRP5
HHH_9
HHH_3
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
121541994
NCBI-ProteinID:
XP_041707347
LinkDB
All DBs
Position
27:36795515..36832985
Genome browser
AA seq
1747 aa
AA seq
DB search
MSDFIDSEAEESEEEFEEKDLKPKKTQAFMDDEEEEEELNTEDQDEHGNLMGLIDDDVDE
DEEDEEKKSGGAGSGSDSEDEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKYDR
VKTMDDDEDDEKDQIADEIFHRGDDEDGEGELEEGETVDPPLRRHGERLDEEEEEEGEEE
SDIDDFIVDDDGQPITKKRGKKFSGYTDAALQEAQEIFGGDFDFAEFDADGAYEQGEEEE
EDQDEEGWDRPKKPTKRRVGRKSIFELYEPSELESSHMTDQDNEIRSTDMPERFQLRSIP
VKPAEDDELEEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNFSRKGPSTIAKIKEALNF
MRNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQGYQY
EQISADPDKPLADGIRPLDTADMERLKDVQSIDELSDVYSHFLLYYGRDIPKMQNAAKAA
SKKKKKMKKKIEVNEEGEEEEVEEEEEEEEKGPDLKLASRRDMYSICQSAGLDGLAKKFG
LTPEQFGENLRDSYQRHETEQFPAEPIELAKDYVCSQFNSPEAVLEGTRYMVAMQIAREP
LVRHVLRQTFQERAKINIKPTKKGKKDMDEAHFGYSFKYLKNKPVKELNGDQFLKMCQAE
EEGLLTIDICIDLLGVKGVAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQF
LYPQMAKELKNKLIAEAKDNIIKSCCRRLYNWLKVAPYRPDQQAEEEDDDLMDESQGKGI
RVLGVAFADSRDAPVFCSLINGEGEVVDFLRLPYFLKRRNAWKEDEREKKLQDIENLKKF
LTSKKPHVVAVAGENRDAHMIMEDIKRTVSELEQESSLPAVGVELVDNELSMLYMNSTKS
QMDFRDYPPLLRQAVSVARKIQDPLVEYAQVCSTDEDILCLKLHPLQEHVVKEDLLSALY
CEFINRVNEVGVDVNRAISHPYTQSLVQFVCGLGLRKGSHLLKILKQNNTRLENRTQLVT
MCHMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDES
AEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRV
PYRAPNTEEVFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDATGLWQCP
FCQQDNFPELSEVWNHFDSGSCPGQAIGVRARMDNGVQGFIPTKFLSDKVVKHPEERVKV
GMTVHCRIMKIDIEKFNVDLTCRTSDLMDKNNEWKLPKDSYYDFDTETEDTKTEEELKKK
QQRTTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQ
HVDVREEGKENAFSLGHTLWINTEEFEDLDEITARYIQPMAAFARDLLGHKYFQDCNGGD
RKKMEELLIRSKKEKPTFIPYFVSACKDLPGKFILGYQPRGKPRVEYVTISPDGFRYRSQ
MFPTVNGLFRWFKDHFQEPVPGITPSSSSRTRTPASVNTTPANINIADLTRAVSALPRNM
TSQMFSAIAAVTGQGQGQNANTTPAQWGSSQYGYTGGSSGGGGGSSSAYHVFATPQQPMA
TPMMTPSYSYTTPSQQTMGTPQYPSSTPQSSHSHGHQGHSSHQGHSSNTPSSSSSRGRTP
QQQPKSGGSAAVDWGKVAEQWLQEKEAERKKQKTPRMTPRPSPSPMIQSTPMSIAGDATP
LLDEMDR
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcatcgatagcgaggctgaggagtcagaggaggagtttgaagagaaagac
ctgaagcccaagaagacgcaggcgtttatggatgatgaggaagaagaggaagagttaaac
acagaggaccaggatgagcacgggaacctgatggggctcatcgacgatgatgtggatgaa
gatgaggaagatgaagaaaagaagagcggaggagcgggcagcggcagtgactcagaggat
gaagtcagacacaggcgcaagaaacgcaactatgatgactacctggatgatgatgatctg
gacctcattgaggagaacttgggggtcaaagtcaagaggaggaagaagaagtatgaccgc
gtgaagacgatggacgatgatgaagatgacgagaaagatcagatcgcagacgagatcttc
cacagaggagacgacgaggacggagagggggagctggaggagggagagaccgtcgacccg
cctctacgtcgccatggtgaacgcctcgacgaagaagaggaagaggagggagaggaggag
tcggatattgacgactttatcgtggacgacgatggccagcctatcaccaagaagagaggc
aagaagttctcaggatacacggacgcagccctccaggaagctcaggagatcttcggcggt
gactttgactttgcggagttcgacgctgacggtgcgtatgaacagggtgaggaagaggag
gaggaccaggatgaagagggctgggaccggcccaagaagccgacgaagaggagggtgggg
aggaagagtatcttcgagctgtacgagcccagcgagctggagagtagtcacatgactgac
caggacaacgagatccggtccacagacatgccagagaggttccagctgcgttccatccca
gtgaagcctgctgaggatgatgagttggaggaagaggcagagtggatctacagaaacgcc
ttctcaacccccaccatctccatgcaggagagtacagattacctggacagaggaaccacc
actaacttcagcaggaagggtcccagcaccatcgccaagattaaggaggccctcaacttc
atgaggaatcagcattttgaggttccgttcatcgcattctacaggaaggagtacgtggaa
ccggagctcaacatcaacgacctgtggaaggtctggcagtgggatgagaagtggtgccag
ctgaagagcaggaagcagaacctgacgcgtctgttccggaggatgcaggggtaccagtat
gagcagatctctgccgaccctgacaaacccctggctgacggcatcagacccctggacacg
gctgatatggagagactgaaggacgtccagtctatagatgagctgagtgatgtgtacagc
cacttcctgctgtactacggccgagacatccccaagatgcagaacgcagccaaggccgcc
agcaagaagaagaagaagatgaagaagaagattgaggttaacgaggaaggtgaggaggaa
gaggtggaggaagaggaggaggaggaagagaaggggccggacctgaagctggcatctcgt
agagacatgtacagcatctgtcagagcgccgggctcgatggcctggctaagaagtttggt
ctgactccagagcagtttggagagaatctgagagacagctaccagcgtcacgagacagag
cagttccctgccgagcctatagagctggccaaagactacgtctgcagtcagtttaacagc
cctgaggcggtgttggaggggacccgttacatggttgcgatgcagattgccagagagcct
ctggtgagacacgtcctcagacagacattccaggagagagccaagatcaacatcaagccc
accaagaagggaaagaaggacatggatgaggcccactttggctactccttcaagtacctg
aagaacaagccagtgaaggagctgaacggagatcagttcttaaagatgtgccaggctgag
gaggaggggcttctcaccatagacatctgcatcgacctcttaggggtcaaaggggttgca
ggtgaccagacgtactttgatgagatcaagcagttttactacagagatgagttcagtcac
caggtccaggagtggaacagacagaggaccctggccatagagaggtccctcacacagttc
ctgtaccctcagatggccaaggaactcaagaacaaactcatcgcagaggccaaggacaac
atcattaagtcgtgttgcaggaggctgtataactggctgaaggtggctccctacagacca
gaccagcaggcggaggaggaggatgatgatctgatggacgagagtcaaggaaaaggcatc
agagtcctgggagtggccttcgcagacagcagagatgcgccagtgttctgttctcttatc
aatggagagggagaggtggtggacttcctccgtctgccctacttcctgaagaggaggaac
gcatggaaggaggacgagagggaaaaaaagctgcaggacattgagaacctgaagaagttc
ctgaccagtaagaagcctcacgtggtggctgttgccggggagaatagggacgcccacatg
ataatggaggacattaagaggacagtgagtgagttggagcaggagtcttctctgcctgct
gtgggagtggagctggtggacaacgaactgtccatgctctacatgaacagtaccaagtct
cagatggacttccgtgactaccctccgctgctgcgccaggctgtgtcagtagccaggaag
attcaggatccccttgtggagtacgctcaggtttgcagcacagacgaagacatcctctgc
ctcaaattacaccctctacaggagcatgtagtaaaggaggacctgctgagtgctctgtac
tgtgagtttataaaccgggtcaacgaggtgggggtggatgtgaacagagccatctctcac
ccctacacacagagcctggtgcagttcgtctgtggcctcggactgaggaagggatcacac
ctgctcaagatcctgaagcagaataacactcgcctggagaaccggactcagctggtcacc
atgtgtcacatgggccccaaggtcttcatcaactgtgctggcttcatcaagatagacacc
gcctcgctcggagacagtactgactcgtacatcgaggttctggacgggtcccgagtgcac
ccggagacatacgagtgggccagaaagatggcggtggacgctctggaatacgatgagtcc
gcggaggacgccaacccggccggagcgctggaggaaatcctggaaaacccagagcgcctc
aaagacctggacctggatgccttcgctgaggagctggagagacagggttatggtaacaag
ggaatcaccctgtatgatatccgtgctgagttgagctgcaggtataaggacctgagagtt
ccctacagagctcctaacactgaggaggtgtttaacctgctcaccaaggagacacctgag
accttctatatagggaagctgatcaccagtgtagtgaccggtatagcccaccggcgcccc
caaggggagagttatgaccaggccatcaggaacgacgctacaggcctgtggcagtgcccc
ttctgtcaacaggacaacttccctgaactcagcgaggtgtggaaccattttgacagtggt
tcgtgtcctggccaggccataggtgtgagggctcggatggacaacggtgtccagggcttc
atccccaccaaattcctcagtgacaaggtggtcaaacaccctgaggagagggtcaaggtg
ggtatgacggtacactgtcgcatcatgaagatcgacatcgagaagttcaacgtggacctg
acgtgtcgtacgtctgacctgatggataagaacaatgagtggaagcttcctaaagacagc
tactacgactttgacacggagacagaggacaccaagacagaggaggaactcaagaagaaa
caacagagaaccacctatataaaacgtgttatcgcccacccatccttccataacatcaac
ttcaagcaggctgagaagatgatggagtctatggaccagggagacgttgttatcaggccg
agcagcaagggagagaaccacctcaccgtcacctggaaggtggctgacggtatctaccag
cacgttgacgtgagagaggagggcaaggagaacgccttcagcctgggacacacactctgg
atcaacactgaggagtttgaggatcttgatgagatcacagctcgttatattcagccaatg
gcagcgttcgctcgcgacctgctgggacacaagtacttccaggactgtaacggaggggac
aggaagaaaatggaggagttgttgatcaggtctaagaaggagaaacctacgttcatcccc
tactttgtctcagcctgtaaagacctgcctgggaagttcatactgggataccagcctcgt
ggcaaaccacgtgttgagtatgtgaccatctctcctgacgggttccggtaccgctcccag
atgttccccaccgttaacggactgttccgctggttcaaagaccacttccaggaaccggta
ccaggcatcacacccagcagtagcagtcgaacacggacacctgcctctgtcaacactaca
ccagctaacatcaacatcgcagacctgacgcgagcggtcagcgctctcccacgcaacatg
acctcccagatgttcagtgccatcgccgcggtgacagggcaggggcagggccagaacgcc
aacactacgcccgcccagtggggctccagccaatacggttacaccgggggcagcagcggg
ggcgggggaggcagctcctcagcctatcacgtgtttgcgacgccccaacagccgatggcg
acgcccatgatgacccccagctactcgtataccacccccagccagcagaccatgggtacc
ccgcagtacccctcctccaccccccagtcctcccactcccacggacaccagggccacagc
agtcaccagggacactcgtccaacacaccctcctcctcctcatccagaggacgcactccg
cagcagcagcctaagtcgggcggcagcgcggcggtggactggggcaaggtggcggagcag
tggctccaggagaaggaggcagagaggaagaagcagaagacacccaggatgaccccgcga
ccttcccccagccccatgatccagagcacgcctatgtcaattgctggagatgccacgccc
cttctggacgagatggaccgatag
DBGET
integrated database retrieval system
